Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY99_RS02090 Genome accession   NZ_CP078118
Coordinates   390225..390656 (-) Length   143 a.a.
NCBI ID   WP_003696281.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385225..395656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS02070 (KWY99_02070) pilA 386922..388175 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  KWY99_RS02075 (KWY99_02075) - 388260..388430 (-) 171 WP_167494755.1 hypothetical protein -
  KWY99_RS02080 (KWY99_02080) - 388444..389228 (-) 785 Protein_388 opacity family porin -
  KWY99_RS02085 (KWY99_02085) - 389724..390107 (-) 384 Protein_389 pilin -
  KWY99_RS02090 (KWY99_02090) pilE 390225..390656 (-) 432 WP_003696281.1 pilin Machinery gene
  KWY99_RS02095 (KWY99_02095) lpxC 390762..391685 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY99_RS02100 (KWY99_02100) pilE 392216..392635 (-) 420 WP_017147167.1 pilin Machinery gene
  KWY99_RS02105 (KWY99_02105) - 392731..393147 (-) 417 Protein_393 pilin -
  KWY99_RS02110 (KWY99_02110) - 393607..394551 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15279.02 Da        Isoelectric Point: 5.9416

>NTDB_id=587062 KWY99_RS02090 WP_003696281.1 390225..390656(-) (pilE) [Neisseria gonorrhoeae strain MS11]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYYLNNGEWPEDNGAAGVASASKIIGKYVKEVKVENGVVTAQMASSNVNKEIQ
GKKLSLWGRREDGSVKWFCGQPVKRDDTAAKAGTDDVAKDDAAGKKIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=587062 KWY99_RS02090 WP_003696281.1 390225..390656(-) (pilE) [Neisseria gonorrhoeae strain MS11]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTTGC
CGGGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CACCGCCGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

64.583

100

0.65
  pilE Neisseria gonorrhoeae MS11

65.957

98.601

0.65