Detailed information NTG0058706

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K749_RS04010
• Genome accession: NC_021216
• Coordinates: 815305..816441 (+)
• Length: 378 a.a.
• NCBI ID: WP_015645817.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM299
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 810305..821441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K749_RS03975 (K749_07000)	panD	810724..811074 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K749_RS03980 (K749_07005)	-	811085..811378 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K749_RS03985 (K749_07010)	-	811378..812373 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K749_RS03990 (K749_07015)	comB6	812381..813436 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K749_RS03995	comB7	813452..813577 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K749_RS04000 (K749_07020)	comB8	813574..814317 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K749_RS04005 (K749_07025)	comB9	814317..815312 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K749_RS04010 (K749_07030)	comB10	815305..816441 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K749_RS04015 (K749_07035)	-	816507..817919 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K749_RS04020 (K749_07040)	gmd	817934..819079 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
K749_RS04025 (K749_07045)	-	819072..820004 (+)	933	WP_015645820.1	GDP-L-fucose synthase	-
K749_RS04030 (K749_07050)	hypE	820246..821244 (-)	999	WP_015645821.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42032.64 Da
• Isoelectric Point: 9.9924

>NTDB_id=58706 K749_RS04010 WP_015645817.1 815305..816441(+) (comB10) [Helicobacter pylori UM299]
MNKWLKGALVFVGGFATIIAISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEVNSSKEETFKSPLIDLKTNTTSPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=58706 K749_RS04010 WP_015645817.1 815305..816441(+) (comB10) [Helicobacter pylori UM299]
ATGAATAAATGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAGCCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAGTGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAATCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955