Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY99_RS01195 Genome accession   NZ_CP078118
Coordinates   222892..223287 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217892..228287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS01175 (KWY99_01175) rfbC 217968..218526 (+) 559 Protein_217 dTDP-4-dehydrorhamnose 3,5-epimerase -
  KWY99_RS01180 (KWY99_01180) - 218570..220588 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  KWY99_RS01185 (KWY99_01185) dnaJ 220783..221904 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWY99_RS01190 (KWY99_01190) - 222038..222487 (+) 450 WP_017147192.1 transposase -
  KWY99_RS01195 (KWY99_01195) comE 222892..223287 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY99_RS11780 - 223389..223508 (-) 120 Protein_222 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=587057 KWY99_RS01195 WP_003703428.1 222892..223287(-) (comE) [Neisseria gonorrhoeae strain MS11]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=587057 KWY99_RS01195 WP_003703428.1 222892..223287(-) (comE) [Neisseria gonorrhoeae strain MS11]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1