Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY95_RS01900 Genome accession   NZ_CP078117
Coordinates   355553..355948 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350553..360948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS11385 - 355332..355451 (+) 120 Protein_360 competence protein ComE -
  KWY95_RS01900 (KWY95_01900) comE 355553..355948 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY95_RS01905 (KWY95_01905) - 356353..356802 (-) 450 WP_017146914.1 transposase -
  KWY95_RS01910 (KWY95_01910) dnaJ 356936..358057 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWY95_RS01915 (KWY95_01915) - 358252..360270 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  KWY95_RS01920 (KWY95_01920) rfbC 360314..360871 (-) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=587019 KWY95_RS01900 WP_003703428.1 355553..355948(+) (comE) [Neisseria gonorrhoeae strain SK92679]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=587019 KWY95_RS01900 WP_003703428.1 355553..355948(+) (comE) [Neisseria gonorrhoeae strain SK92679]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1