Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY95_RS01140 Genome accession   NZ_CP078117
Coordinates   213152..213568 (+) Length   138 a.a.
NCBI ID   WP_218423539.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208152..218568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS01110 (KWY95_01110) metG 208377..210431 (+) 2055 WP_003701748.1 methionine--tRNA ligase -
  KWY95_RS01115 (KWY95_01115) - 210507..210815 (-) 309 Protein_215 NAD(P)-dependent oxidoreductase -
  KWY95_RS01120 (KWY95_01120) - 210819..211151 (+) 333 Protein_216 pilin -
  KWY95_RS01125 (KWY95_01125) - 211178..211533 (+) 356 Protein_217 pilin -
  KWY95_RS01130 (KWY95_01130) - 212024..212431 (+) 408 Protein_218 pilin -
  KWY95_RS11835 pilE 212470..212940 (+) 471 WP_003701721.1 pilin Machinery gene
  KWY95_RS01140 (KWY95_01140) pilE 213152..213568 (+) 417 WP_218423539.1 pilin Machinery gene
  KWY95_RS01145 (KWY95_01145) thiC 214056..215957 (-) 1902 WP_003701752.1 phosphomethylpyrimidine synthase ThiC -
  KWY95_RS01155 (KWY95_01155) - 216555..217430 (+) 876 WP_003701753.1 NUDIX hydrolase family protein -
  KWY95_RS01160 (KWY95_01160) - 217439..218380 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14973.56 Da        Isoelectric Point: 5.2937

>NTDB_id=587014 KWY95_RS01140 WP_218423539.1 213152..213568(+) (pilE) [Neisseria gonorrhoeae strain SK92679]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPEDNDKAGVASASEIKGKYVQSVTVAKGVVTAQMASTGVNNEIK
GKKLSLWAKREDGSVKWFCGQPVKRNGDNDDVNADGTDNKKIDTKHLPSTCRDESTAK

Nucleotide


Download         Length: 417 bp        

>NTDB_id=587014 KWY95_RS01140 WP_218423539.1 213152..213568(+) (pilE) [Neisseria gonorrhoeae strain SK92679]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAATGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGG
CGACAACGACGACGTCAACGCCGACGGCACCGACAACAAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATG
AATCAACTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.087

100

0.761
  pilE Neisseria gonorrhoeae MS11

67.391

100

0.674