Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY96_RS10865 Genome accession   NZ_CP078116
Coordinates   2098464..2098859 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2093464..2103859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS11715 - 2098243..2098362 (+) 120 Protein_2102 competence protein ComE -
  KWY96_RS10865 (KWY96_10865) comE 2098464..2098859 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY96_RS11915 - 2098793..2098940 (-) 148 Protein_2104 peptidase -
  KWY96_RS10870 (KWY96_10870) - 2099493..2099732 (-) 240 WP_003689861.1 membrane protein -
  KWY96_RS10875 (KWY96_10875) - 2099729..2100025 (-) 297 WP_003689859.1 hypothetical protein -
  KWY96_RS10885 (KWY96_10885) - 2100253..2100480 (+) 228 WP_153707886.1 hypothetical protein -
  KWY96_RS10890 (KWY96_10890) aroG 2100642..2101697 (+) 1056 WP_003701675.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  KWY96_RS10895 (KWY96_10895) - 2101765..2102253 (+) 489 WP_003689852.1 dihydrofolate reductase -
  KWY96_RS10900 (KWY96_10900) - 2102283..2102759 (-) 477 WP_003689851.1 CYTH domain-containing protein -
  KWY96_RS10905 (KWY96_10905) - 2102771..2103199 (-) 429 WP_020997399.1 CopD family protein -
  KWY96_RS10910 (KWY96_10910) - 2103311..2103556 (+) 246 WP_003689849.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=587001 KWY96_RS10865 WP_003703428.1 2098464..2098859(+) (comE) [Neisseria gonorrhoeae strain 88G285]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=587001 KWY96_RS10865 WP_003703428.1 2098464..2098859(+) (comE) [Neisseria gonorrhoeae strain 88G285]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1