Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY96_RS09645 Genome accession   NZ_CP078116
Coordinates   1861350..1861745 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1856350..1866745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS09625 (KWY96_09625) rfbC 1856427..1856984 (+) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  KWY96_RS09630 (KWY96_09630) - 1857028..1859046 (-) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  KWY96_RS09635 (KWY96_09635) dnaJ 1859241..1860362 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWY96_RS09640 (KWY96_09640) - 1860496..1860945 (+) 450 WP_017146914.1 transposase -
  KWY96_RS09645 (KWY96_09645) comE 1861350..1861745 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY96_RS11690 - 1861847..1861966 (-) 120 Protein_1873 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=586992 KWY96_RS09645 WP_003703428.1 1861350..1861745(-) (comE) [Neisseria gonorrhoeae strain 88G285]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586992 KWY96_RS09645 WP_003703428.1 1861350..1861745(-) (comE) [Neisseria gonorrhoeae strain 88G285]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1