Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KWY96_RS07695 Genome accession   NZ_CP078116
Coordinates   1481363..1481962 (+) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain 88G285     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476363..1486962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS07680 (KWY96_07680) yihA 1476948..1477577 (+) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  KWY96_RS07685 (KWY96_07685) - 1477697..1480093 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  KWY96_RS07690 (KWY96_07690) pilM 1480245..1481360 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  KWY96_RS07695 (KWY96_07695) pilN 1481363..1481962 (+) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  KWY96_RS07700 (KWY96_07700) - 1481963..1482610 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  KWY96_RS07705 (KWY96_07705) pilP 1482628..1483173 (+) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  KWY96_RS07710 (KWY96_07710) pilQ 1483192..1485387 (+) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=586985 KWY96_RS07695 WP_003700890.1 1481363..1481962(+) (pilN) [Neisseria gonorrhoeae strain 88G285]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=586985 KWY96_RS07695 WP_003700890.1 1481363..1481962(+) (pilN) [Neisseria gonorrhoeae strain 88G285]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97