Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KWY96_RS07705 Genome accession   NZ_CP078116
Coordinates   1482628..1483173 (+) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 88G285     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477628..1488173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS07685 (KWY96_07685) - 1477697..1480093 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  KWY96_RS07690 (KWY96_07690) pilM 1480245..1481360 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  KWY96_RS07695 (KWY96_07695) pilN 1481363..1481962 (+) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  KWY96_RS07700 (KWY96_07700) - 1481963..1482610 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  KWY96_RS07705 (KWY96_07705) pilP 1482628..1483173 (+) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  KWY96_RS07710 (KWY96_07710) pilQ 1483192..1485387 (+) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  KWY96_RS07715 (KWY96_07715) - 1486655..1487167 (+) 513 WP_003687349.1 shikimate kinase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=586986 KWY96_RS07705 WP_003687351.1 1482628..1483173(+) (pilP) [Neisseria gonorrhoeae strain 88G285]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=586986 KWY96_RS07705 WP_003687351.1 1482628..1483173(+) (pilP) [Neisseria gonorrhoeae strain 88G285]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983