Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KWY96_RS06420 Genome accession   NZ_CP078116
Coordinates   1235542..1236345 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain 88G285     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1230542..1241345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY96_RS06395 (KWY96_06395) holA 1230555..1231553 (-) 999 WP_003687654.1 DNA polymerase III subunit delta -
  KWY96_RS06400 (KWY96_06400) lptE 1231555..1232034 (-) 480 WP_003687653.1 LPS assembly lipoprotein LptE -
  KWY96_RS06405 (KWY96_06405) pgeF 1232086..1232865 (-) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  KWY96_RS06410 (KWY96_06410) - 1233318..1234292 (+) 975 Protein_1251 bile acid:sodium symporter family protein -
  KWY96_RS06415 (KWY96_06415) rluD 1234419..1235543 (-) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KWY96_RS06420 (KWY96_06420) comL 1235542..1236345 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  KWY96_RS06425 (KWY96_06425) comA 1236415..1238634 (-) 2220 WP_154017543.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KWY96_RS06430 (KWY96_06430) - 1238666..1238941 (+) 276 WP_153707850.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=586980 KWY96_RS06420 WP_003687645.1 1235542..1236345(+) (comL) [Neisseria gonorrhoeae strain 88G285]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=586980 KWY96_RS06420 WP_003687645.1 1235542..1236345(+) (comL) [Neisseria gonorrhoeae strain 88G285]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963