Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWZ00_RS07735 Genome accession   NZ_CP078115
Coordinates   1469446..1469841 (+) Length   131 a.a.
NCBI ID   WP_256347977.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1464446..1474841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS12045 - 1469225..1469344 (+) 120 Protein_1524 competence protein ComE -
  KWZ00_RS07735 (KWZ00_07735) comE 1469446..1469841 (+) 396 WP_256347977.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWZ00_RS07740 (KWZ00_07740) - 1470246..1470695 (-) 450 WP_012504153.1 transposase -
  KWZ00_RS07745 (KWZ00_07745) dnaJ 1470829..1471950 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWZ00_RS07750 (KWZ00_07750) - 1472145..1474163 (+) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  KWZ00_RS07755 (KWZ00_07755) rfbC 1474207..1474764 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13826.63 Da        Isoelectric Point: 10.8790

>NTDB_id=586944 KWZ00_RS07735 WP_256347977.1 1469446..1469841(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPSIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586944 KWZ00_RS07735 WP_256347977.1 1469446..1469841(+) (comE) [Neisseria gonorrhoeae strain O1G1370]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGAGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992