Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWZ00_RS06820 Genome accession   NZ_CP078115
Coordinates   1299816..1300229 (+) Length   137 a.a.
NCBI ID   WP_218422830.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294816..1305229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS06795 (KWZ00_06795) - 1295149..1295892 (+) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KWZ00_RS06800 (KWZ00_06800) - 1295889..1296578 (+) 690 WP_047919168.1 SprT family zinc-dependent metalloprotease -
  KWZ00_RS12205 (KWZ00_06805) - 1297163..1297825 (+) 663 WP_143824139.1 pilin -
  KWZ00_RS06810 (KWZ00_06810) pilE 1297921..1298337 (+) 417 WP_047918825.1 pilin Machinery gene
  KWZ00_RS06815 (KWZ00_06815) lpxC 1298787..1299710 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWZ00_RS06820 (KWZ00_06820) pilE 1299816..1300229 (+) 414 WP_218422830.1 pilin Machinery gene
  KWZ00_RS12035 - 1301209..1301711 (+) 503 Protein_1353 pilin -
  KWZ00_RS06835 (KWZ00_06835) - 1302121..1302936 (+) 816 WP_218422833.1 opacity family porin -
  KWZ00_RS06840 (KWZ00_06840) - 1302950..1303123 (+) 174 WP_195764347.1 hypothetical protein -
  KWZ00_RS06845 (KWZ00_06845) pilA 1303200..1304453 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15098.83 Da        Isoelectric Point: 8.4841

>NTDB_id=586939 KWZ00_RS06820 WP_218422830.1 1299816..1300229(+) (pilE) [Neisseria gonorrhoeae strain O1G1370]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNGAAGVASASEIKGKYVQKVEVKKGVVTAQMASTGVNKEIQ
DKRLSLWGRRENGSVKWFCGQPVKRNANNNDTVAADKDKEIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=586939 KWZ00_RS06820 WP_218422830.1 1299816..1300229(+) (pilE) [Neisseria gonorrhoeae strain O1G1370]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCAAAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GACAAAAGACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAACAACAACGACACCGTTGCCGCCGACAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTGATAAAC
ACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.638

100

0.752
  pilE Neisseria gonorrhoeae MS11

72.662

100

0.737