Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   KWZ00_RS04345 Genome accession   NZ_CP078115
Coordinates   822627..826229 (+) Length   1200 a.a.
NCBI ID   WP_047918929.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817627..831229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS04325 (KWZ00_04325) - 819059..819814 (-) 756 WP_003687790.1 amino acid ABC transporter ATP-binding protein -
  KWZ00_RS04330 (KWZ00_04330) - 819824..820540 (-) 717 WP_003687787.1 amino acid ABC transporter permease -
  KWZ00_RS04335 (KWZ00_04335) - 820530..821357 (-) 828 WP_080347140.1 amino acid ABC transporter substrate-binding protein -
  KWZ00_RS04340 (KWZ00_04340) - 821642..822550 (+) 909 WP_010357322.1 Dyp-type peroxidase -
  KWZ00_RS04345 (KWZ00_04345) recB 822627..826229 (+) 3603 WP_047918929.1 exodeoxyribonuclease V subunit beta Machinery gene
  KWZ00_RS04350 (KWZ00_04350) - 826268..826627 (+) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  KWZ00_RS04355 (KWZ00_04355) - 826752..827231 (+) 480 WP_003692767.1 DUF302 domain-containing protein -
  KWZ00_RS04360 (KWZ00_04360) radA 827506..828885 (-) 1380 WP_003687778.1 DNA repair protein RadA Machinery gene
  KWZ00_RS04365 (KWZ00_04365) - 829252..830376 (+) 1125 WP_003698140.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 1200 a.a.        Molecular weight: 134187.73 Da        Isoelectric Point: 5.6266

>NTDB_id=586925 KWZ00_RS04345 WP_047918929.1 822627..826229(+) (recB) [Neisseria gonorrhoeae strain O1G1370]
MSAPIRAFDPLTAPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATADLKTRLRARLDDVLQVLE
SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRDAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WEIALIDEFQDTDPLQYEIFQKIFIARNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNF
KGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKAQ
LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRTYACEKDGITMLKRNW
RRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICII
DYKSNHLSAYTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK

Nucleotide


Download         Length: 3603 bp        

>NTDB_id=586925 KWZ00_RS04345 WP_047918929.1 822627..826229(+) (recB) [Neisseria gonorrhoeae strain O1G1370]
ATGTCCGCACCCATCCGAGCATTCGACCCGCTGACCGCCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTGGAACAAAAAAGCGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACTGCCGATCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTGGAA
AGCAAAGAAATTGCCGAACTTGGAGACGACACGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGCACTCCTGGAACAGGCTTTGCAAAAAGAAAGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCCTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCTCAAGATTTTTGGCGGGAACG
CGTCAGCGGCGACCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCGACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATATCTCAACAGCAGCCTTGCCGAAATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAATCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAGATTTTCATCGCCCG
AAACCGCCCGCTGTTCCTCGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATCGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCGCCCAAACGTCCTGCCGTACAGCTCCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCGCGCGCTCAACGAAGCCTCCGGAGGCCGTCTGAATTTC
AAAGGCCGCCCGTTGCAGTCGGGCGATATTGCCGTTCTGGTACGCACGCACAACGAGGCGGTGATGATTTCCGCCGCACT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCGC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACATATG
GCAAAAATACGGCATTTTCGCCGCTATGCAGCAGTTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCA
CTGCACAAATGGCTGCGCGATCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTTTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGACCGTCCGACTGGCAAATCCTCCACCAAGGCGCAAACCGGGCCGAACTTTTGGCAAAGGCGCAA
CTGTCGGAAAGCGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTACCTATGCGTGTGAAAAAGACGGCATAACGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAATGCCCCGGCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGATCAAGCCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCAAACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGAACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACT
GGGGCATACGGCCTGTCCGACATCCCGCCCGGGTGCCGCCGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGCTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAGACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCATCATC
GACTACAAATCCAACCACCTATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCAGCACTATTACCTTCA
GGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTTCCGTCCGCTACC
TGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTGGAACAGATAAAA
TAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

99.417

100

0.994