Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   K749_RS01115 Genome accession   NC_021216
Coordinates   222529..222933 (-) Length   134 a.a.
NCBI ID   WP_015645360.1    Uniprot ID   -
Organism   Helicobacter pylori UM299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 217529..227933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K749_RS01080 (K749_03940) - 217699..218799 (-) 1101 WP_015645354.1 hypothetical protein -
  K749_RS01085 (K749_03945) - 218789..219574 (-) 786 WP_015645355.1 hypothetical protein -
  K749_RS01090 (K749_03950) - 219574..219960 (-) 387 WP_015645356.1 DUF1294 domain-containing protein -
  K749_RS07870 (K749_03955) - 220280..220441 (-) 162 WP_014536434.1 lysozyme -
  K749_RS07875 (K749_03960) - 220507..220956 (-) 450 WP_015645357.1 glycoside hydrolase family protein -
  K749_RS01100 (K749_03965) - 220967..221527 (-) 561 WP_015645358.1 hypothetical protein -
  K749_RS01105 (K749_03970) - 221511..221849 (-) 339 WP_000699911.1 hypothetical protein -
  K749_RS01110 (K749_09050) - 222038..222400 (-) 363 Protein_223 tetratricopeptide repeat protein -
  K749_RS01115 (K749_03980) dprB 222529..222933 (-) 405 WP_015645360.1 Holliday junction resolvase RuvX Machinery gene
  K749_RS01120 (K749_03985) dprA 222930..223730 (-) 801 WP_015645361.1 DNA-processing protein DprA Machinery gene
  K749_RS01125 (K749_03990) minE 223742..223975 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  K749_RS01130 (K749_03995) minD 223972..224778 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  K749_RS01135 (K749_04000) ilvC 224802..225794 (-) 993 WP_015645362.1 ketol-acid reductoisomerase -
  K749_RS01145 (K749_04005) - 226042..226824 (+) 783 WP_015645363.1 NAD+ synthase -
  K749_RS01150 (K749_04010) - 226821..227759 (+) 939 WP_015645364.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15262.89 Da        Isoelectric Point: 9.8085

>NTDB_id=58691 K749_RS01115 WP_015645360.1 222529..222933(-) (dprB) [Helicobacter pylori UM299]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=58691 K749_RS01115 WP_015645360.1 222529..222933(-) (dprB) [Helicobacter pylori UM299]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCCTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGACGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment