Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY97_RS11035 Genome accession   NZ_CP078114
Coordinates   2108761..2109186 (-) Length   141 a.a.
NCBI ID   WP_218446850.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 98D159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103761..2114186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS11020 (KWY97_11020) pilA 2105386..2106639 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  KWY97_RS11025 (KWY97_11025) - 2106908..2107732 (-) 825 WP_218446911.1 opacity family porin -
  KWY97_RS11030 (KWY97_11030) - 2108278..2108643 (-) 366 Protein_2147 pilin -
  KWY97_RS11035 (KWY97_11035) pilE 2108761..2109186 (-) 426 WP_218446850.1 pilin Machinery gene
  KWY97_RS11040 (KWY97_11040) lpxC 2109292..2110215 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY97_RS11045 (KWY97_11045) - 2110730..2111113 (-) 384 Protein_2150 pilin -
  KWY97_RS11050 (KWY97_11050) - 2111659..2111784 (+) 126 Protein_2151 IS110 family transposase -
  KWY97_RS11055 (KWY97_11055) - 2112093..2112469 (+) 377 Protein_2152 transposase -
  KWY97_RS11060 (KWY97_11060) - 2112668..2113288 (+) 621 WP_003696151.1 fused MFS/spermidine synthase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15137.06 Da        Isoelectric Point: 8.7129

>NTDB_id=586908 KWY97_RS11035 WP_218446850.1 2108761..2109186(-) (pilE) [Neisseria gonorrhoeae strain 98D159]
MPTRLDSRLRGNDEAILLAEGQKSAVAGYCPNHGKWPENNDKAGVASPATDIKGKYVEKVEVAKGVVTATMKSDGVNKEI
QGKKLSLWARRENGSVKWFCGQPVTRDAADAKDDVKAAADAGTKIETKHLPSTCRDEPTAT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=586908 KWY97_RS11035 WP_218446850.1 2108761..2109186(-) (pilE) [Neisseria gonorrhoeae strain 98D159]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCAAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTGAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CGCCGCCGACGCCAAAGACGACGTCAAAGCCGCCGCCGACGCCGGCACCAAAATCGAAACCAAGCACCTGCCGTCAACCT
GCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

69.286

99.291

0.688
  pilE Neisseria gonorrhoeae strain FA1090

67.606

100

0.681