Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY97_RS10155 Genome accession   NZ_CP078114
Coordinates   1943943..1944338 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 98D159     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938943..1949338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS10135 (KWY97_10135) rfbC 1939021..1939578 (+) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  KWY97_RS10140 (KWY97_10140) - 1939622..1941640 (-) 2019 WP_047917586.1 OPT family oligopeptide transporter -
  KWY97_RS10145 (KWY97_10145) dnaJ 1941835..1942956 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWY97_RS10150 (KWY97_10150) - 1943090..1943539 (+) 450 WP_012504153.1 transposase -
  KWY97_RS10155 (KWY97_10155) comE 1943943..1944338 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY97_RS11900 - 1944440..1944559 (-) 120 Protein_1980 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=586902 KWY97_RS10155 WP_003703428.1 1943943..1944338(-) (comE) [Neisseria gonorrhoeae strain 98D159]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586902 KWY97_RS10155 WP_003703428.1 1943943..1944338(-) (comE) [Neisseria gonorrhoeae strain 98D159]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1