Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KWY97_RS06900 Genome accession   NZ_CP078114
Coordinates   1316878..1317681 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain 98D159     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1311878..1322681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS06875 (KWY97_06875) holA 1311891..1312889 (-) 999 WP_003687654.1 DNA polymerase III subunit delta -
  KWY97_RS06880 (KWY97_06880) lptE 1312891..1313370 (-) 480 WP_003687653.1 LPS assembly lipoprotein LptE -
  KWY97_RS06885 (KWY97_06885) pgeF 1313422..1314201 (-) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  KWY97_RS06890 (KWY97_06890) - 1314654..1315628 (+) 975 Protein_1353 bile acid:sodium symporter family protein -
  KWY97_RS06895 (KWY97_06895) rluD 1315755..1316879 (-) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KWY97_RS06900 (KWY97_06900) comL 1316878..1317681 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  KWY97_RS06905 (KWY97_06905) comA 1317751..1319970 (-) 2220 WP_020997305.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KWY97_RS06910 (KWY97_06910) - 1320002..1320277 (+) 276 WP_153707850.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=586891 KWY97_RS06900 WP_003687645.1 1316878..1317681(+) (comL) [Neisseria gonorrhoeae strain 98D159]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=586891 KWY97_RS06900 WP_003687645.1 1316878..1317681(+) (comL) [Neisseria gonorrhoeae strain 98D159]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963