Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KWY97_RS05985 Genome accession   NZ_CP078114
Coordinates   1147638..1148249 (-) Length   203 a.a.
NCBI ID   WP_218446806.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 98D159     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1142638..1153249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS05955 (KWY97_05955) yaaA 1143265..1144044 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  KWY97_RS05960 (KWY97_05960) dapC 1144200..1145387 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWY97_RS05965 (KWY97_05965) dut 1145459..1145911 (-) 453 WP_003701071.1 dUTP diphosphatase -
  KWY97_RS05970 (KWY97_05970) - 1146077..1146788 (+) 712 Protein_1175 AzlC family ABC transporter permease -
  KWY97_RS05975 (KWY97_05975) - 1146785..1147093 (+) 309 WP_025456241.1 AzlD family protein -
  KWY97_RS05980 (KWY97_05980) pilL 1147163..1147636 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  KWY97_RS05985 (KWY97_05985) pilK 1147638..1148249 (-) 612 WP_218446806.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY97_RS05990 (KWY97_05990) pilJ 1148228..1149196 (-) 969 WP_003702438.1 PilW family protein Machinery gene
  KWY97_RS05995 (KWY97_05995) pilI 1149193..1149801 (-) 609 WP_218446807.1 type IV pilus modification protein PilV Machinery gene
  KWY97_RS06000 (KWY97_06000) pilH 1149833..1150498 (-) 666 WP_218446905.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY97_RS06005 (KWY97_06005) dnaB 1150806..1152212 (-) 1407 WP_218446808.1 replicative DNA helicase -
  KWY97_RS06010 (KWY97_06010) - 1152376..1152957 (+) 582 WP_003698180.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22135.16 Da        Isoelectric Point: 8.7658

>NTDB_id=586884 KWY97_RS05985 WP_218446806.1 1147638..1148249(-) (pilK) [Neisseria gonorrhoeae strain 98D159]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPIVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMP
RYIIEYLGEKNNQKIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=586884 KWY97_RS05985 WP_218446806.1 1147638..1148249(-) (pilK) [Neisseria gonorrhoeae strain 98D159]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGGACGGCAAGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAAGATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956