Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY94_RS01205 Genome accession   NZ_CP078113
Coordinates   232761..233156 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227761..238156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS11345 - 232540..232659 (+) 120 Protein_227 competence protein ComE -
  KWY94_RS01205 (KWY94_01205) comE 232761..233156 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY94_RS01210 (KWY94_01210) - 233561..234010 (-) 450 WP_017146914.1 transposase -
  KWY94_RS01215 (KWY94_01215) dnaJ 234144..235265 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  KWY94_RS01220 (KWY94_01220) - 235460..237478 (+) 2019 WP_047924189.1 OPT family oligopeptide transporter -
  KWY94_RS01225 (KWY94_01225) rfbC 237522..238079 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=586825 KWY94_RS01205 WP_003703428.1 232761..233156(+) (comE) [Neisseria gonorrhoeae strain O2D156]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=586825 KWY94_RS01205 WP_003703428.1 232761..233156(+) (comE) [Neisseria gonorrhoeae strain O2D156]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1