Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY94_RS00445 Genome accession   NZ_CP078113
Coordinates   91251..91682 (+) Length   143 a.a.
NCBI ID   WP_218461104.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86251..96682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS00425 (KWY94_00425) metG 86956..89010 (+) 2055 WP_047917751.1 methionine--tRNA ligase -
  KWY94_RS00430 (KWY94_00430) - 89086..89394 (-) 309 Protein_83 NAD(P)-dependent oxidoreductase -
  KWY94_RS00435 (KWY94_00435) - 89398..89739 (+) 342 Protein_84 pilin -
  KWY94_RS00440 (KWY94_00440) lpxC 90222..91145 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY94_RS00445 (KWY94_00445) pilE 91251..91682 (+) 432 WP_218461104.1 pilin Machinery gene
  KWY94_RS00450 (KWY94_00450) - 91784..91870 (+) 87 Protein_87 pilin -
  KWY94_RS00455 (KWY94_00455) thiC 92552..94453 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  KWY94_RS00465 (KWY94_00465) - 95051..95926 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15331.22 Da        Isoelectric Point: 8.7129

>NTDB_id=586820 KWY94_RS00445 WP_218461104.1 91251..91682(+) (pilE) [Neisseria gonorrhoeae strain O2D156]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYCPNHGKWPENNDKAGVASPATDIKGKYVKEVKVENGVVTATMKSDGVNKEI
KGKRLSLWAKREAGSVKWFCGRPVKRTAADDANDTVAADTADTAGKIETKHLPSTCRDTSMTN

Nucleotide


Download         Length: 432 bp        

>NTDB_id=586820 KWY94_RS00445 WP_218461104.1 91251..91682(+) (pilE) [Neisseria gonorrhoeae strain O2D156]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCAAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCAC
CGCCGCCGACGACGCCAACGACACCGTTGCCGCCGACACCGCCGACACCGCCGGCAAAATCGAAACCAAGCACCTGCCGT
CAACCTGCCGCGATACGTCAATGACAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

69.784

97.203

0.678
  pilE Neisseria gonorrhoeae strain FA1090

62.411

98.601

0.615