Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY94_RS00340 Genome accession   NZ_CP078113
Coordinates   68522..68824 (+) Length   100 a.a.
NCBI ID   WP_305729162.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 63522..73824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS00310 (KWY94_00310) - 63861..65312 (-) 1452 WP_047949563.1 spermidine synthase -
  KWY94_RS00315 (KWY94_00315) - 65335..65955 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  KWY94_RS00320 (KWY94_00320) - 66154..66530 (-) 377 Protein_59 transposase -
  KWY94_RS00325 (KWY94_00325) - 66839..66964 (-) 126 Protein_60 IS110 family transposase -
  KWY94_RS00330 (KWY94_00330) - 67506..67901 (+) 396 Protein_61 pilin -
  KWY94_RS00335 (KWY94_00335) - 68079..68483 (+) 405 Protein_62 pilin -
  KWY94_RS00340 (KWY94_00340) pilE 68522..68824 (+) 303 WP_305729162.1 pilin Machinery gene
  KWY94_RS00345 (KWY94_00345) - 69455..70147 (+) 693 WP_256345073.1 opacity family porin -
  KWY94_RS00350 (KWY94_00350) - 70161..70331 (+) 171 WP_181874755.1 hypothetical protein -
  KWY94_RS00355 (KWY94_00355) pilA 70416..71624 (-) 1209 WP_003702112.1 signal recognition particle-docking protein FtsY Machinery gene
  KWY94_RS00360 (KWY94_00360) msrAB 71770..73338 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10491.75 Da        Isoelectric Point: 10.2983

>NTDB_id=586818 KWY94_RS00340 WP_305729162.1 68522..68824(+) (pilE) [Neisseria gonorrhoeae strain O2D156]
MASTPTDIKGKYVKSVTVANGVVTAQMNPSGVNNEIKGKRLSLWAKRENGSVKWFCGQPVTRTAGAKAGNDAVTDDANGN
NGINTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 303 bp        

>NTDB_id=586818 KWY94_RS00340 WP_305729162.1 68522..68824(+) (pilE) [Neisseria gonorrhoeae strain O2D156]
GTGGCATCCACCCCCACCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAAT
GAATCCAAGCGGCGTAAACAATGAAATCAAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCACCGCCGGCGCCAAAGCCGGCAACGACGCCGTCACCGACGACGCCAACGGCAAC
AACGGCATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(3-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.727

99

0.72
  pilE Neisseria gonorrhoeae strain FA1090

64.211

95

0.61