Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   J5Y16_RS12770 Genome accession   NZ_CP078097
Coordinates   2651459..2652700 (+) Length   413 a.a.
NCBI ID   WP_071252690.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain GR0548     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2646459..2657700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Y16_RS12745 (J5Y16_12745) tsf 2646942..2647823 (+) 882 WP_003565808.1 translation elongation factor Ts -
  J5Y16_RS12750 (J5Y16_12750) pyrH 2648059..2648778 (+) 720 WP_003565806.1 UMP kinase -
  J5Y16_RS12755 (J5Y16_12755) frr 2648778..2649335 (+) 558 WP_003565804.1 ribosome recycling factor -
  J5Y16_RS12760 (J5Y16_12760) - 2649866..2650618 (+) 753 WP_003575287.1 isoprenyl transferase -
  J5Y16_RS12765 (J5Y16_12765) - 2650654..2651442 (+) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  J5Y16_RS12770 (J5Y16_12770) eeP 2651459..2652700 (+) 1242 WP_071252690.1 RIP metalloprotease RseP Regulator
  J5Y16_RS12775 (J5Y16_12775) - 2652725..2654452 (+) 1728 WP_218209762.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45137.75 Da        Isoelectric Point: 8.6663

>NTDB_id=586793 J5Y16_RS12770 WP_071252690.1 2651459..2652700(+) (eeP) [Lacticaseibacillus paracasei subsp. paracasei strain GR0548]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETTLQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=586793 J5Y16_RS12770 WP_071252690.1 2651459..2652700(+) (eeP) [Lacticaseibacillus paracasei subsp. paracasei strain GR0548]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCCCTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGA
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGTGG
GATGCCGGTTCAAGTGAGCCGCGTCGATTTGGTCAAAGATCTGGTGATTGAAGGTTATCCGAACGGGGACGAAACAACCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCTGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAAGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCTTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-400)

PDZ domain (PDZ_6)

(206-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504