Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J5Y16_RS06345 Genome accession   NZ_CP078097
Coordinates   1313739..1314335 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain GR0548     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1308739..1319335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Y16_RS06320 (J5Y16_06320) - 1308826..1310070 (-) 1245 WP_218210243.1 ISL3 family transposase -
  J5Y16_RS06325 (J5Y16_06325) - 1310263..1310457 (-) 195 WP_003568474.1 hypothetical protein -
  J5Y16_RS06330 (J5Y16_06330) cydB 1310484..1311503 (-) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  J5Y16_RS06335 (J5Y16_06335) - 1311496..1312974 (-) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  J5Y16_RS06340 (J5Y16_06340) rpsR 1313416..1313652 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  J5Y16_RS06345 (J5Y16_06345) ssb 1313739..1314335 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  J5Y16_RS06350 (J5Y16_06350) rpsF 1314366..1314662 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  J5Y16_RS06355 (J5Y16_06355) ssb 1314790..1315221 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  J5Y16_RS06360 (J5Y16_06360) deoC 1315528..1316232 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  J5Y16_RS06365 (J5Y16_06365) gyrA 1316337..1318958 (-) 2622 WP_218210245.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=586774 J5Y16_RS06345 WP_003568462.1 1313739..1314335(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain GR0548]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=586774 J5Y16_RS06345 WP_003568462.1 1313739..1314335(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain GR0548]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTTACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAATTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485