Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KUD99_RS13030 Genome accession   NZ_CP078087
Coordinates   2776741..2778966 (-) Length   741 a.a.
NCBI ID   WP_218421680.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2771741..2783966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS12995 murB 2772131..2773150 (-) 1020 WP_218421678.1 UDP-N-acetylmuramate dehydrogenase -
  KUD99_RS13000 - 2773147..2773614 (-) 468 WP_125865382.1 low molecular weight protein-tyrosine-phosphatase -
  KUD99_RS13005 kdsB 2773616..2774380 (-) 765 WP_125865383.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KUD99_RS13010 - 2774377..2774562 (-) 186 WP_011913743.1 Trm112 family protein -
  KUD99_RS13015 lpxK 2774608..2775612 (-) 1005 WP_218421679.1 tetraacyldisaccharide 4'-kinase -
  KUD99_RS13020 - 2775612..2776040 (-) 429 WP_079329150.1 ExbD/TolR family protein -
  KUD99_RS13025 - 2776037..2776669 (-) 633 WP_013983260.1 MotA/TolQ/ExbB proton channel family protein -
  KUD99_RS13030 comA 2776741..2778966 (-) 2226 WP_218421680.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KUD99_RS13035 - 2779112..2779627 (+) 516 WP_011913748.1 DUF2062 domain-containing protein -
  KUD99_RS13040 - 2779640..2780884 (-) 1245 WP_218421681.1 lipoprotein-releasing ABC transporter permease subunit -
  KUD99_RS13045 lolD 2780884..2781582 (-) 699 WP_013983263.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KUD99_RS13050 - 2781590..2782837 (-) 1248 WP_020307157.1 lipoprotein-releasing ABC transporter permease subunit -
  KUD99_RS13055 - 2782870..2783505 (+) 636 WP_170801307.1 PilZ domain-containing protein -
  KUD99_RS13060 - 2783509..2783817 (+) 309 WP_011913753.1 hypothetical protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80950.54 Da        Isoelectric Point: 9.9660

>NTDB_id=586649 KUD99_RS13030 WP_218421680.1 2776741..2778966(-) (comA) [Stutzerimonas stutzeri strain YWX-1]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRHRWVAPGLFLLGLSWACYQSQSAIDDRLAASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASAASDGWRDQLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFDVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPVAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LAFPPRVEMPDGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GADAVQRLLRVDRVVSGEPSRLAPDLGAERCESGSSWQWNDVRFSLWQWQMARDSNQQSCVLQIEANGERILLTGDIDQA
AEQAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRGVASHAALISRSLHNAFGHPHPSVVERLEILDIRAYDTALHGAIRI
ELGSFSPPRLQRSQRRFWREK

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=586649 KUD99_RS13030 WP_218421680.1 2776741..2778966(-) (comA) [Stutzerimonas stutzeri strain YWX-1]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGTCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGCTGCTCCTGCTGCGTCACCGCTGGGTGGCGCCGGGCTTGTTTCTGCTGGGTTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTGGCGGCGTCCATGGACGGTCGCACGTTCTGGATCGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTGCAAGCCGGCGAGCGCTGGCGCCTGGCGGCGCGAC
TGAAGCGACCGCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGCATCGGCGCCACG
GGCACGATAAAGGCGGGCGAGCGCCTGACGGCGTCGGCGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGATGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGATTGCGCTTTCGCCACCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCTCTGGTGACATTGCAGCCGGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGCGCTGGTGGATGGCGCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGACTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCGTGGCCGGGGTTGGCGAAGCGCTGCTGTCGGTGGTGGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCCGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTGTTGCCG
CTGGCGTTCCCGCCTCGTGTCGAGATGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTGGGGCAGGGCCTGGCGGT
GCTTGTACGCACCCGCGAGCATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGATCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGGACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACGTTGCGAAAGCGGTAGCAGCTGGCAGTGGAACGACGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCGTGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCAGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTACTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCGGCGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTCGGACACC
CACACCCAAGCGTGGTCGAGCGGCTCGAGATCCTCGATATCCGGGCCTACGACACCGCCTTGCATGGCGCAATCCGCATA
GAGCTGGGAAGCTTTTCGCCTCCTCGGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-168)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-673)

Competence protein (Competence)

(201-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

67.087

96.356

0.646
  comA Ralstonia pseudosolanacearum GMI1000

37.548

100

0.393