Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EVX74_RS02590 Genome accession   NZ_CP078045
Coordinates   576297..576932 (-) Length   211 a.a.
NCBI ID   WP_004732299.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain AL_065     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571297..581932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVX74_RS02555 (EVX74_002540) mlaE 571449..572228 (+) 780 WP_004732313.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  EVX74_RS02560 (EVX74_002545) - 572228..572905 (+) 678 WP_004732312.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EVX74_RS02565 (EVX74_002550) - 572924..573556 (+) 633 WP_004732310.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  EVX74_RS02570 (EVX74_002555) - 573572..573862 (+) 291 WP_004732307.1 STAS domain-containing protein -
  EVX74_RS02575 (EVX74_002560) - 574104..575117 (-) 1014 WP_004732304.1 CorA family divalent cation transporter -
  EVX74_RS02580 (EVX74_002565) - 575270..575860 (+) 591 WP_004732303.1 TIGR00730 family Rossman fold protein -
  EVX74_RS02585 (EVX74_002570) - 575891..576292 (+) 402 WP_004732301.1 NUDIX hydrolase -
  EVX74_RS02590 (EVX74_002575) comF 576297..576932 (-) 636 WP_004732299.1 ComF family protein Machinery gene
  EVX74_RS02595 (EVX74_002580) recG 576919..578964 (-) 2046 WP_004732297.1 ATP-dependent DNA helicase RecG -
  EVX74_RS02600 (EVX74_002585) - 578998..579813 (+) 816 WP_004732295.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24300.46 Da        Isoelectric Point: 9.4810

>NTDB_id=586502 EVX74_RS02590 WP_004732299.1 576297..576932(-) (comF) [Acinetobacter lwoffii strain AL_065]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQLQIACDYAYPMDRLIQLFKYEQTLHL
QNLLAGALLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKKLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=586502 EVX74_RS02590 WP_004732299.1 576297..576932(-) (comF) [Acinetobacter lwoffii strain AL_065]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTACAGATTGCCTGCGACTATGCCTATCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGACACTGCATTTG
CAAAATTTACTGGCAGGTGCGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCAATTGTACCGATGCCGATCTCGAATGA
GCGTCTGGCAGAGCGCGGGTATAATCAATCTCTGGTGCTGGCAAAACATGTGGCGAAAAAGCTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.937

98.104

0.578
  comF Acinetobacter baumannii D1279779

58.454

98.104

0.573