Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EGT68_RS13830 Genome accession   NZ_CP078042
Coordinates   2902259..2903689 (+) Length   476 a.a.
NCBI ID   WP_004958496.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897259..2908689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13810 (EGT68_013810) - 2897969..2898583 (-) 615 WP_125272420.1 hypothetical protein -
  EGT68_RS13815 (EGT68_013815) pbpG 2898747..2899808 (-) 1062 WP_125272421.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  EGT68_RS13820 (EGT68_013820) - 2900020..2900655 (+) 636 WP_004957336.1 response regulator -
  EGT68_RS13825 (EGT68_013825) pilS 2900671..2902236 (+) 1566 WP_125272422.1 ATP-binding protein Regulator
  EGT68_RS13830 (EGT68_013830) pilR 2902259..2903689 (+) 1431 WP_004958496.1 sigma-54 dependent transcriptional regulator Regulator
  EGT68_RS13835 (EGT68_013835) - 2903728..2904903 (-) 1176 WP_125272423.1 S41 family peptidase -
  EGT68_RS13840 (EGT68_013840) gpmI 2904913..2906457 (-) 1545 WP_004917026.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  EGT68_RS13845 (EGT68_013845) lptG 2906577..2907647 (-) 1071 WP_125272428.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53488.45 Da        Isoelectric Point: 6.1504

>NTDB_id=586485 EGT68_RS13830 WP_004958496.1 2902259..2903689(+) (pilR) [Acinetobacter junii strain AJ_068]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=586485 EGT68_RS13830 WP_004958496.1 2902259..2903689(+) (pilR) [Acinetobacter junii strain AJ_068]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAATCTTCCAGATGGAAATGGTCTTGATCTCGTTAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAACACCTATTCAACAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGACTTATCTTATCTGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GGCAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAGCGTGGTCAAGATATCTTAATT
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAATATTATTGAACGTGCGATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATCTGCAAACCGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAGCGCTA
TTTAGAAAATATTGAAAAAGAAGTATTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49