Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGK58_RS02355 Genome accession   NZ_CP078027
Coordinates   523468..524103 (-) Length   211 a.a.
NCBI ID   WP_125278975.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518468..529103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS02320 (EGK58_002320) mlaE 518518..519297 (+) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  EGK58_RS02325 (EGK58_002325) - 519297..519974 (+) 678 WP_004786968.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EGK58_RS02330 (EGK58_002330) - 519993..520628 (+) 636 WP_004786965.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  EGK58_RS02335 (EGK58_002335) - 520641..520931 (+) 291 WP_125278977.1 STAS domain-containing protein -
  EGK58_RS02340 (EGK58_002340) - 521277..522290 (-) 1014 WP_004786961.1 CorA family divalent cation transporter -
  EGK58_RS02345 (EGK58_002345) - 522443..523033 (+) 591 WP_171431250.1 TIGR00730 family Rossman fold protein -
  EGK58_RS02350 (EGK58_002350) - 523062..523466 (+) 405 WP_125278976.1 NUDIX hydrolase -
  EGK58_RS02355 (EGK58_002355) comF 523468..524103 (-) 636 WP_125278975.1 ComF family protein Machinery gene
  EGK58_RS02360 (EGK58_002360) recG 524090..526135 (-) 2046 WP_125278974.1 ATP-dependent DNA helicase RecG -
  EGK58_RS02365 (EGK58_002365) - 526169..526981 (+) 813 WP_125278973.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24368.60 Da        Isoelectric Point: 9.4106

>NTDB_id=586408 EGK58_RS02355 WP_125278975.1 523468..524103(-) (comF) [Acinetobacter variabilis strain AV_175]
MPMFKLLQQGKLWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EPLLAGALLALKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPVERLKQHSQKGLSRLERIEDIEAQF
KVTTSSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=586408 EGK58_RS02355 WP_125278975.1 523468..524103(-) (comF) [Acinetobacter variabilis strain AV_175]
ATGCCTATGTTTAAGCTTTTACAACAGGGTAAACTCTGGCTGAATCGTTTACAGCCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACTTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACCATTCAGCGTCAGGAAATGC
AGTTTCAGGTGGCGTGTGACTATGCCTACCCGATGGATCGCCTGATTCAATTATTTAAATATGAGCAAAAGCTGCATCTG
GAACCATTATTGGCAGGTGCATTACTGGCTTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGGCTGGTCGAACGTGGCTATAATCAATCCTTGTTACTGGCCAAGCATGTAGCTAAACATTTACAAGTTCCTGTCTGGC
AACCAGTTGAGCGACTTAAGCAACATTCACAAAAAGGCTTAAGCCGTCTGGAACGTATCGAAGACATTGAAGCTCAATTT
AAGGTTACTACCTCTTCAAAAGTTCGTTATCGTAAGGTTTTAATTATCGATGATGTGGTTACGACTGGTAGCTCGATTCG
AGCTTTAAGTCAACAGCTGGAAAAACTGGGCTGCCAGCAGATTTACGCCGCTTGTCTGGCAGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.836

98.104

0.607
  comF Acinetobacter baumannii D1279779

61.353

98.104

0.602