Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   EGT69_RS14725 Genome accession   NZ_CP078018
Coordinates   3072628..3073635 (-) Length   335 a.a.
NCBI ID   WP_125297308.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_351     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067628..3078635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS14715 (EGT69_014715) pilY1 3068002..3071754 (-) 3753 WP_125297306.1 PilC/PilY family type IV pilus protein Machinery gene
  EGT69_RS14720 (EGT69_014720) - 3071777..3072631 (-) 855 WP_125297307.1 hypothetical protein -
  EGT69_RS14725 (EGT69_014725) pilW 3072628..3073635 (-) 1008 WP_125297308.1 PilW family protein Machinery gene
  EGT69_RS14730 (EGT69_014730) pilV 3073635..3074183 (-) 549 WP_125297309.1 type IV pilus modification protein PilV Machinery gene
  EGT69_RS14735 (EGT69_014735) - 3074183..3074683 (-) 501 WP_125297310.1 pilus assembly FimT family protein -
  EGT69_RS14740 (EGT69_014740) ispH 3074824..3075774 (-) 951 WP_125297311.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGT69_RS14745 (EGT69_014745) gmk 3075877..3076500 (+) 624 WP_004909574.1 guanylate kinase -
  EGT69_RS14750 (EGT69_014750) rpoZ 3076571..3076849 (+) 279 WP_004909577.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36232.17 Da        Isoelectric Point: 7.8499

>NTDB_id=586387 EGT69_RS14725 WP_125297308.1 3072628..3073635(-) (pilW) [Acinetobacter junii strain AJ_351]
MKAPYAVSHKPMQQRGFTLIELMVALVLGLIITAAAIQLLTGGFLNARMQEANAELQNSGVFGLDYVARDIRLANYTNIN
NPALTEQTPWGGIVLTARTGTGTNVNLPVPDKAPFISNGLLTHSVGSTEAVSAVKNEWRGLSNVDVSSDQLTIQFVAPNA
MVNCEGTNVQEGDYVIQRYFLRPADDPDSTTSKEYGLACDANTPEALSTPDPLKTIPKGFGDAGQVIMPRVDHFTIQLGT
RAANGNLAYYTVNQYRTLANAARTAAPPTVPPRIVSVKLGVVVRSVDNTRNSAIDLTKKIDILNQQVELTDKDTKYARRV
YSTTVALRNGLGERL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=586387 EGT69_RS14725 WP_125297308.1 3072628..3073635(-) (pilW) [Acinetobacter junii strain AJ_351]
ATGAAAGCTCCATATGCTGTTTCTCATAAGCCAATGCAGCAACGAGGTTTTACCCTGATTGAACTCATGGTGGCTTTGGT
ACTAGGTTTAATCATTACTGCTGCGGCAATACAACTATTAACAGGTGGCTTTCTAAATGCCCGAATGCAAGAGGCAAATG
CGGAACTACAAAATAGTGGTGTATTCGGTTTAGACTACGTAGCCCGTGATATTCGTTTGGCGAATTATACCAACATTAAT
AATCCAGCACTAACTGAACAAACGCCGTGGGGGGGGATTGTATTAACTGCTCGTACTGGTACAGGAACAAATGTTAACCT
TCCAGTTCCAGACAAAGCGCCTTTTATCTCAAACGGTTTACTCACACATAGCGTAGGGTCAACTGAAGCTGTCAGTGCAG
TGAAAAATGAATGGCGTGGCCTCTCAAATGTTGATGTGTCAAGTGATCAACTTACAATTCAGTTTGTTGCACCAAATGCG
ATGGTGAATTGTGAGGGGACAAACGTGCAGGAGGGCGACTATGTTATCCAACGTTATTTTTTGCGCCCTGCTGATGATCC
TGATAGTACAACAAGCAAAGAATATGGTTTGGCCTGTGATGCAAATACCCCAGAAGCATTATCAACACCAGATCCATTAA
AAACCATACCTAAAGGTTTTGGTGATGCAGGTCAGGTGATTATGCCTCGAGTTGACCACTTTACGATACAGCTTGGTACG
CGGGCAGCAAATGGTAACCTTGCCTATTATACAGTGAACCAGTATCGAACCCTTGCAAACGCAGCACGTACGGCTGCACC
ACCTACAGTTCCACCCCGAATTGTTTCCGTAAAACTGGGCGTTGTGGTACGTTCTGTGGACAACACTCGCAATAGCGCAA
TTGATTTAACTAAAAAGATTGATATTTTAAATCAACAAGTTGAGTTAACAGATAAAGATACCAAATATGCACGTCGTGTA
TATAGTACCACGGTTGCGCTTCGCAATGGTTTGGGAGAAAGACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(222-329)

Prokaryotic N-terminal methylation motif (N_methyl)

(13-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

52.87

98.806

0.522