Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   EGT69_RS01100 Genome accession   NZ_CP078018
Coordinates   234134..235285 (-) Length   383 a.a.
NCBI ID   WP_125297939.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_351     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229134..240285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS01080 (EGT69_001080) - 230306..230971 (+) 666 WP_171065654.1 TetR/AcrR family transcriptional regulator -
  EGT69_RS01085 (EGT69_001085) - 231075..231995 (+) 921 WP_125297937.1 DMT family transporter -
  EGT69_RS01090 (EGT69_001090) - 232390..232959 (-) 570 WP_125297938.1 Sua5/YciO/YrdC/YwlC family protein -
  EGT69_RS01095 (EGT69_001095) dprA 232997..234124 (-) 1128 WP_004905514.1 DNA-processing protein DprA Machinery gene
  EGT69_RS01100 (EGT69_001100) tsaP 234134..235285 (-) 1152 WP_125297939.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  EGT69_RS01105 (EGT69_001105) def 235406..235936 (+) 531 WP_004905508.1 peptide deformylase -
  EGT69_RS01110 (EGT69_001110) - 235958..236395 (+) 438 WP_039048136.1 DUF2946 family protein -
  EGT69_RS01115 (EGT69_001115) - 236469..238604 (+) 2136 WP_125297940.1 TonB-dependent copper receptor -
  EGT69_RS01120 (EGT69_001120) - 238651..239412 (-) 762 WP_125297941.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41829.99 Da        Isoelectric Point: 9.2542

>NTDB_id=586360 EGT69_RS01100 WP_125297939.1 234134..235285(-) (tsaP) [Acinetobacter junii strain AJ_351]
MKKVLNGIHSFHALGLKKQLIAVAICAGLGMTVNITHAASPNVSPPSVKAGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGGGTTLRPQVRIEALNNSVPVIPLAHIQQWLER
SSVLPADAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGKRYGVYREGEPYIVVDEQGKKQNLGVELLQVASGVAVRN
ENDITTVELTDSYNGEVRRGDRVMLEQEAMLPTLFYPIDAKQVRDGGKVIRVLGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGEIVQDPKTKEKVKLPGQYVGSLMIFKSFDRISYAYVLESELPIKVGSNIQPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=586360 EGT69_RS01100 WP_125297939.1 234134..235285(-) (tsaP) [Acinetobacter junii strain AJ_351]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGTTGCCATCTGTGC
AGGATTAGGCATGACGGTAAATATAACGCATGCAGCAAGCCCTAATGTTAGCCCACCCTCTGTTAAAGCTGGGGCACCAC
ATGTCTATGTAGTGAAAAAAGGCGATACCCTTTGGGATATCTCAGGCAAGTTTTTAAGTAAACCATGGCGCTGGCCAGAA
ATTTGGGCAAGCAATAAACACGTTAAGAATCCTCACTGGATTTATCCAGGTGACCGCTTACTACTCTGTAGTTTGAATGG
CAAACCGTTAATCGGTAAAGATGAAGGTGACGGCTGTGACGGTATTATTCGTCGTTATACAGGTGGTGGAACAACTTTAC
GTCCGCAAGTACGTATCGAAGCATTGAACAATAGTGTGCCAGTTATTCCATTGGCTCATATTCAACAATGGTTAGAACGT
AGTTCAGTATTACCAGCGGATGCGATTGCGAATACCCCTTATATCTTAGGCACAGCTGACAATCGCGTGCTTGCAGGCAA
AGGACAAAGTGTTTACGTCCGTGGTCAAGGTCTAGAAAATGGTAAGCGTTATGGCGTTTACCGTGAAGGTGAACCTTACA
TCGTTGTTGATGAGCAAGGCAAAAAGCAAAACCTAGGTGTTGAATTACTTCAAGTCGCATCTGGTGTTGCTGTGCGCAAT
GAAAACGACATTACTACGGTTGAACTCACTGATAGCTATAACGGCGAAGTTCGTCGTGGTGATCGCGTGATGCTTGAACA
AGAGGCAATGTTGCCAACCTTGTTCTATCCTATCGATGCAAAACAAGTACGCGATGGCGGTAAAGTGATTCGTGTATTAG
GATCGATTGGTACAGCCGCAAAAAATGGTGTTGTCACTGTTGATCGTGGTACTGCAGATGGCGTTGAAATTGGTCAAGTC
TTTAGCACCTACCAAGAGGGTGAGATCGTACAAGATCCAAAAACTAAAGAGAAAGTTAAATTACCTGGACAATATGTGGG
TAGCTTAATGATCTTCAAGAGTTTTGATCGTATCAGCTATGCCTACGTTTTAGAAAGTGAACTACCAATCAAGGTCGGTT
CAAACATCCAACCACCACGCTTGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.656

100

0.728