Detailed information NTG0058597

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: MDRSPN_RS10730
• Genome accession: NZ_AP018391
• Coordinates: 2027918..2029015 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain MDRSPN001
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2022918..2034015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MDRSPN_RS10705 (MDRSPN_02033)	pgsA	2023439..2023984 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
MDRSPN_RS10710 (MDRSPN_02034)	rodZ	2023995..2024816 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
MDRSPN_RS10715 (MDRSPN_02035)	yfmH	2024858..2026141 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
MDRSPN_RS10720 (MDRSPN_02036)	yfmF	2026138..2027388 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
MDRSPN_RS10725 (MDRSPN_02037)	yaaA	2027547..2027915 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
MDRSPN_RS10730 (MDRSPN_02038)	recF	2027918..2029015 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
MDRSPN_RS10735 (MDRSPN_02039)	guaB	2029066..2030544 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
MDRSPN_RS10740 (MDRSPN_02040)	trpS	2030696..2031721 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
MDRSPN_RS10745 (MDRSPN_02041)	-	2031927..2033549 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=58597 MDRSPN_RS10730 WP_000266662.1 2027918..2029015(+) (recF) [Streptococcus pneumoniae strain MDRSPN001]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=58597 MDRSPN_RS10730 WP_000266662.1 2027918..2029015(+) (recF) [Streptococcus pneumoniae strain MDRSPN001]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46