Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KTR69_RS12435 Genome accession   NZ_CP077960
Coordinates   2444111..2444686 (-) Length   191 a.a.
NCBI ID   WP_218696871.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain WHA07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2439111..2449686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR69_RS12375 - 2439130..2439522 (-) 393 WP_218696855.1 hypothetical protein -
  KTR69_RS12380 - 2439536..2439742 (-) 207 WP_218696856.1 hypothetical protein -
  KTR69_RS16065 - 2439932..2440435 (-) 504 WP_218696857.1 MazG-like family protein -
  KTR69_RS12390 - 2440437..2440643 (-) 207 WP_218696858.1 hypothetical protein -
  KTR69_RS12395 - 2440644..2440898 (-) 255 WP_218696859.1 hypothetical protein -
  KTR69_RS12400 - 2440934..2441158 (-) 225 WP_218696860.1 hypothetical protein -
  KTR69_RS12405 - 2441161..2441505 (-) 345 WP_218696861.1 SA1788 family PVL leukocidin-associated protein -
  KTR69_RS12410 - 2441496..2441690 (-) 195 WP_218696863.1 hypothetical protein -
  KTR69_RS12415 - 2441704..2441865 (-) 162 WP_218696865.1 hypothetical protein -
  KTR69_RS12420 - 2441862..2442653 (-) 792 WP_218696867.1 ATP-binding protein -
  KTR69_RS12425 - 2442637..2443434 (-) 798 WP_218696869.1 DnaD domain protein -
  KTR69_RS12430 - 2443421..2444098 (-) 678 WP_218696870.1 putative HNHc nuclease -
  KTR69_RS12435 ssbA 2444111..2444686 (-) 576 WP_218696871.1 single-stranded DNA-binding protein Machinery gene
  KTR69_RS12440 - 2444679..2445332 (-) 654 WP_218696872.1 ERF family protein -
  KTR69_RS12445 - 2445334..2445873 (-) 540 WP_218696873.1 host-nuclease inhibitor Gam family protein -
  KTR69_RS12450 - 2445866..2446135 (-) 270 WP_218696874.1 hypothetical protein -
  KTR69_RS12455 - 2446138..2446398 (-) 261 WP_218696875.1 hypothetical protein -
  KTR69_RS12460 - 2446388..2446672 (-) 285 WP_218696876.1 DUF2482 family protein -
  KTR69_RS12465 - 2446841..2447080 (+) 240 WP_218696877.1 hypothetical protein -
  KTR69_RS12470 - 2447392..2447601 (-) 210 WP_218696878.1 hypothetical protein -
  KTR69_RS12475 - 2447623..2447817 (-) 195 WP_218696879.1 XRE family transcriptional regulator -
  KTR69_RS12480 - 2448015..2448755 (+) 741 WP_218696881.1 XRE family transcriptional regulator -
  KTR69_RS12485 - 2449122..2449529 (+) 408 WP_218696883.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22107.86 Da        Isoelectric Point: 7.7550

>NTDB_id=585713 KTR69_RS12435 WP_218696871.1 2444111..2444686(-) (ssbA) [Mammaliicoccus sciuri strain WHA07]
MINRVVLVGRLTKNPEFRTTPNGIGVTTFTLAVNRTFTQNGEKQADFLNCVAFRNTAEAVNNYLQKGNLAGVEGRIQTRN
YENNEGKRVYVTEVVCDSVQFLEPKNTNQQNNNYQQSNYNQQQNYNQQQGNQYQNNYQQQGNYQQSNFNQQQNNYQQRQN
NNYASTQQNQPPNPFSNSNVPVDIKDEDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=585713 KTR69_RS12435 WP_218696871.1 2444111..2444686(-) (ssbA) [Mammaliicoccus sciuri strain WHA07]
ATGATTAATAGAGTTGTATTAGTAGGTAGATTAACCAAAAATCCAGAATTTAGAACAACACCGAATGGCATTGGTGTAAC
AACGTTCACTTTAGCAGTCAATAGAACATTTACACAAAATGGTGAAAAACAGGCTGATTTTTTAAATTGTGTTGCTTTCA
GAAACACTGCTGAAGCGGTTAATAATTATTTGCAAAAAGGTAATTTAGCAGGTGTTGAAGGCAGAATTCAAACAAGAAAT
TATGAAAATAATGAAGGTAAGAGGGTTTATGTTACTGAAGTAGTATGTGATAGTGTGCAATTTTTAGAGCCTAAAAATAC
AAATCAACAAAACAATAACTATCAACAATCTAATTATAATCAGCAACAGAATTACAACCAACAACAAGGCAATCAATATC
AAAACAATTATCAGCAACAAGGTAATTATCAACAGTCAAATTTTAATCAACAACAAAATAATTACCAACAACGACAAAAT
AATAATTATGCATCAACACAACAAAATCAACCACCTAATCCTTTTTCAAATTCTAATGTCCCAGTTGATATTAAAGATGA
AGATTTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.083

100

0.524
  ssb Latilactobacillus sakei subsp. sakei 23K

44.792

100

0.45