Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   KVP03_RS09685 Genome accession   NZ_CP077959
Coordinates   2037839..2039161 (-) Length   440 a.a.
NCBI ID   WP_230923093.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2032839..2044161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS09670 (KVP03_09650) - 2035080..2036477 (+) 1398 WP_111692170.1 ISNCY-like element ISSeq2 family transposase -
  KVP03_RS09675 (KVP03_09655) hpf 2036575..2037123 (-) 549 WP_014623350.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KVP03_RS09680 (KVP03_09660) - 2037199..2037780 (-) 582 WP_126437237.1 ComF family protein -
  KVP03_RS09685 (KVP03_09665) comFA/cflA 2037839..2039161 (-) 1323 WP_230923093.1 DEAD/DEAH box helicase Machinery gene
  KVP03_RS09690 (KVP03_09670) - 2039217..2039858 (+) 642 WP_042671178.1 YigZ family protein -
  KVP03_RS09695 (KVP03_09675) cysK 2039979..2040905 (+) 927 WP_012679990.1 cysteine synthase A -
  KVP03_RS09700 (KVP03_09680) - 2041292..2041654 (-) 363 WP_111692702.1 S1 RNA-binding domain-containing protein -
  KVP03_RS09705 (KVP03_09685) - 2041654..2043054 (-) 1401 WP_111692703.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  KVP03_RS09710 (KVP03_09690) - 2043087..2043728 (-) 642 WP_041785672.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49918.97 Da        Isoelectric Point: 9.4534

>NTDB_id=585676 KVP03_RS09685 WP_230923093.1 2037839..2039161(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
ASFPKGHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEVYHRSPIIVATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPIIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHHLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=585676 KVP03_RS09685 WP_230923093.1 2037839..2039161(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGCAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTTCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCCGTTACCGGCGCTGGTAAAACAGAGATGATGTATGAAGCCA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAGTCTGCCTTATGCATGCTGAGTCAGAGGTTTATCATAGAAGTCCCATTATCGTTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTCCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGATTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACGTTGGCAAGAAGATTCCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACCGGCTATCCTCTTTTAATCTTTTTTCCGATTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
TTGCAAAAGTATTTTCCTAAGGAAACTATTGCTCATGCTTCCAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCAACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCACCTTTACACAAGCAGCAGTCTTATTCAAATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCTGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTTAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(101-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae D39

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae R6

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae Rx1

52.235

96.591

0.505
  comFA/cflA Streptococcus mitis SK321

52.235

96.591

0.505
  comFA/cflA Streptococcus mitis NCTC 12261

52

96.591

0.502
  comFA Lactococcus lactis subsp. cremoris KW2

48.469

89.091

0.432