Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   KVP03_RS02570 Genome accession   NZ_CP077959
Coordinates   490941..493382 (+) Length   813 a.a.
NCBI ID   WP_165623668.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 451460..498803 490941..493382 within 0


Gene organization within MGE regions


Location: 451460..498803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS02265 (KVP03_02260) - 451460..452527 (-) 1068 WP_050316299.1 tyrosine-type recombinase/integrase -
  KVP03_RS02270 (KVP03_02265) - 452795..453481 (-) 687 WP_012678830.1 type II toxin-antitoxin system PemK/MazF family toxin -
  KVP03_RS02275 (KVP03_02270) - 453492..454238 (-) 747 WP_012678831.1 helix-turn-helix domain-containing protein -
  KVP03_RS02280 (KVP03_02275) - 454402..454617 (+) 216 WP_012678832.1 phage repressor protein -
  KVP03_RS02285 (KVP03_02280) - 454652..454801 (+) 150 WP_002986888.1 hypothetical protein -
  KVP03_RS02290 (KVP03_02285) - 454798..454998 (-) 201 WP_002988329.1 KTSC domain-containing protein -
  KVP03_RS02295 (KVP03_02290) - 455109..455393 (+) 285 WP_012678833.1 hypothetical protein -
  KVP03_RS02300 (KVP03_02295) - 455390..455536 (+) 147 WP_012678834.1 hypothetical protein -
  KVP03_RS02305 (KVP03_02300) - 455740..455985 (+) 246 WP_012678836.1 helix-turn-helix domain-containing protein -
  KVP03_RS02310 (KVP03_02305) - 456132..456515 (+) 384 WP_012678837.1 DnaD domain-containing protein -
  KVP03_RS02315 (KVP03_02310) - 456496..456729 (+) 234 WP_012678838.1 hypothetical protein -
  KVP03_RS02320 (KVP03_02315) - 456726..456866 (+) 141 WP_142240698.1 hypothetical protein -
  KVP03_RS02325 (KVP03_02320) - 456875..457081 (+) 207 WP_050316298.1 hypothetical protein -
  KVP03_RS02330 (KVP03_02325) - 457243..458148 (+) 906 WP_050316297.1 recombinase RecT -
  KVP03_RS02335 (KVP03_02330) - 458148..459359 (+) 1212 WP_050316296.1 DUF1351 domain-containing protein -
  KVP03_RS02340 (KVP03_02335) - 459352..460188 (+) 837 WP_050316295.1 PD-(D/E)XK nuclease-like domain-containing protein -
  KVP03_RS02345 (KVP03_02340) - 460373..460714 (+) 342 WP_050316294.1 hypothetical protein -
  KVP03_RS02350 (KVP03_02345) - 460711..461223 (+) 513 WP_050316293.1 hypothetical protein -
  KVP03_RS02355 (KVP03_02350) - 461210..461404 (+) 195 WP_050316292.1 hypothetical protein -
  KVP03_RS02360 (KVP03_02355) - 461401..461718 (+) 318 WP_050316291.1 VVA0879 family protein -
  KVP03_RS02365 (KVP03_02360) - 461697..461897 (+) 201 WP_050316289.1 hypothetical protein -
  KVP03_RS02370 (KVP03_02365) - 461890..462117 (+) 228 WP_050316287.1 hypothetical protein -
  KVP03_RS02375 (KVP03_02370) - 462121..462264 (+) 144 WP_166525024.1 hypothetical protein -
  KVP03_RS02380 (KVP03_02375) - 462261..462842 (+) 582 WP_074632266.1 DUF1642 domain-containing protein -
  KVP03_RS10580 - 463010..463240 (+) 231 WP_050316286.1 hypothetical protein -
  KVP03_RS02385 (KVP03_02380) - 463619..464053 (+) 435 WP_042356698.1 ArpU family phage packaging/lysis transcriptional regulator -
  KVP03_RS02390 (KVP03_02385) - 464256..465419 (+) 1164 WP_050316285.1 DNA modification methylase -
  KVP03_RS02395 (KVP03_02390) - 465585..466061 (+) 477 WP_050316284.1 hypothetical protein -
  KVP03_RS02400 (KVP03_02395) - 466144..467358 (+) 1215 WP_050316283.1 PBSX family phage terminase large subunit -
  KVP03_RS02405 (KVP03_02400) - 467368..468867 (+) 1500 WP_050316281.1 phage portal protein -
  KVP03_RS02410 (KVP03_02405) - 468867..470477 (+) 1611 WP_050315872.1 phage minor capsid protein -
  KVP03_RS02415 (KVP03_02410) - 470443..470664 (+) 222 WP_050315871.1 CPCC family cysteine-rich protein -
  KVP03_RS02420 (KVP03_02415) - 470716..471000 (+) 285 WP_230923174.1 hypothetical protein -
  KVP03_RS02425 (KVP03_02420) - 471086..471325 (+) 240 WP_050315869.1 hypothetical protein -
  KVP03_RS02430 (KVP03_02425) - 471310..471912 (+) 603 WP_230923175.1 hypothetical protein -
  KVP03_RS02435 (KVP03_02430) - 471914..472786 (+) 873 WP_230923176.1 hypothetical protein -
  KVP03_RS02440 (KVP03_02435) - 472797..473045 (+) 249 WP_050315866.1 hypothetical protein -
  KVP03_RS02445 (KVP03_02440) - 473048..473434 (+) 387 WP_050315865.1 hypothetical protein -
  KVP03_RS02450 (KVP03_02445) - 473428..473772 (+) 345 WP_050315864.1 putative minor capsid protein -
  KVP03_RS02455 (KVP03_02450) - 473769..474122 (+) 354 WP_050315863.1 minor capsid protein -
  KVP03_RS02460 (KVP03_02455) - 474125..474493 (+) 369 WP_050315862.1 hypothetical protein -
  KVP03_RS02465 (KVP03_02460) - 474497..474994 (+) 498 WP_050316279.1 phage tail tube protein -
  KVP03_RS02470 (KVP03_02465) - 475014..475421 (+) 408 WP_050315860.1 hypothetical protein -
  KVP03_RS02475 (KVP03_02470) - 475429..476046 (+) 618 WP_050316278.1 Gp15 family bacteriophage protein -
  KVP03_RS02480 (KVP03_02475) - 476047..478494 (+) 2448 WP_050315858.1 phage tail tape measure protein -
  KVP03_RS02485 (KVP03_02480) - 478498..479259 (+) 762 WP_050315857.1 phage tail domain-containing protein -
  KVP03_RS02490 (KVP03_02485) - 479270..481267 (+) 1998 WP_230923177.1 phage tail protein -
  KVP03_RS10480 (KVP03_02490) - 481267..481965 (+) 699 WP_269063358.1 collagen-like protein -
  KVP03_RS02500 (KVP03_02495) - 481967..482581 (+) 615 WP_230923178.1 hypothetical protein -
  KVP03_RS02505 (KVP03_02500) - 482720..482899 (+) 180 WP_043053058.1 CopG family transcriptional regulator -
  KVP03_RS02510 (KVP03_02505) - 483014..483286 (+) 273 WP_043053024.1 hypothetical protein -
  KVP03_RS02515 (KVP03_02510) - 483349..484107 (+) 759 WP_043053025.1 BRO family protein -
  KVP03_RS02520 (KVP03_02515) - 484240..486123 (+) 1884 WP_230923179.1 gp58-like family protein -
  KVP03_RS02525 (KVP03_02520) - 486132..486563 (+) 432 WP_050316275.1 DUF1617 family protein -
  KVP03_RS02530 (KVP03_02525) - 486567..487178 (+) 612 WP_050316274.1 DUF1366 domain-containing protein -
  KVP03_RS02535 (KVP03_02530) - 487190..487561 (+) 372 WP_012678881.1 phage holin family protein -
  KVP03_RS02540 (KVP03_02535) - 487687..488904 (+) 1218 WP_230923180.1 peptidoglycan amidohydrolase family protein -
  KVP03_RS02545 (KVP03_02540) - 488980..489165 (-) 186 WP_050316272.1 helix-turn-helix domain-containing protein -
  KVP03_RS02550 (KVP03_02545) - 489192..489470 (-) 279 WP_050316271.1 hypothetical protein -
  KVP03_RS02555 (KVP03_02550) prx 489643..489855 (+) 213 WP_050316270.1 Paratox Regulator
  KVP03_RS02560 (KVP03_02555) - 490107..490310 (+) 204 WP_012514799.1 cold-shock protein -
  KVP03_RS02565 (KVP03_02560) - 490480..490941 (+) 462 WP_012677252.1 CtsR family transcriptional regulator -
  KVP03_RS02570 (KVP03_02565) clpC 490941..493382 (+) 2442 WP_165623668.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  KVP03_RS10520 - 493730..493875 (-) 146 Protein_448 putative holin-like toxin -
  KVP03_RS02580 (KVP03_02575) - 494156..494587 (+) 432 WP_230923181.1 hypothetical protein -
  KVP03_RS02585 (KVP03_02580) - 494589..495878 (+) 1290 WP_230923182.1 lipase family protein -
  KVP03_RS02590 (KVP03_02585) - 495860..496252 (+) 393 WP_043052249.1 hypothetical protein -
  KVP03_RS02595 (KVP03_02590) - 496233..496523 (+) 291 WP_230923183.1 hypothetical protein -
  KVP03_RS02600 (KVP03_02595) groES 496823..497110 (+) 288 WP_012514806.1 co-chaperone GroES -
  KVP03_RS02605 (KVP03_02600) groL 497178..498803 (+) 1626 WP_043025047.1 chaperonin GroEL -

Sequence


Protein


Download         Length: 813 a.a.        Molecular weight: 90498.36 Da        Isoelectric Point: 6.3877

>NTDB_id=585646 KVP03_RS02570 WP_165623668.1 490941..493382(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AVHTAVKLARRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMNKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSRLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAISQDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAVLAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGDLSSGQSLK
IGVSRGKLVFDIA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=585646 KVP03_RS02570 WP_165623668.1 490941..493382(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTAGCTATGGTAGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAACGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAGTTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGCAAAATCATCTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGTGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAAATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTGTCCATACTGCTGTGAAGCTGGCTCGGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAACAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAGGCTATCAGGTATTCCACTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
AAATTTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ATCAGTCAGGCATTCGCACAGGCAGACGCCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGACATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCTCGTCTCAATGGTGCTCCTCCTGGCTATGTTGGCTATGATGAAGGAGGCGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTCGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCAGCCAGGATCACCAAGCCATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGTCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGATTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGTTAGTTTTTGATATTGCTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

75.031

100

0.75

  clpC Streptococcus thermophilus LMD-9

72.304

100

0.726

  clpC Streptococcus thermophilus LMG 18311

72.059

100

0.723

  clpC Streptococcus pneumoniae Rx1

66.093

100

0.662

  clpC Streptococcus pneumoniae D39

66.093

100

0.662

  clpC Streptococcus pneumoniae TIGR4

65.971

100

0.661

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.623

100

0.499

  clpC Bacillus subtilis subsp. subtilis str. 168

44.019

100

0.453

  clpE Streptococcus mutans UA159

45.356

79.459

0.36