Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KU512_RS11690 Genome accession   NZ_CP077933
Coordinates   2291543..2293171 (-) Length   542 a.a.
NCBI ID   WP_061657937.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 359     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2286543..2298171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU512_RS11655 (KU512_11650) rlmH 2287396..2287875 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  KU512_RS14565 - 2288082..2288168 (+) 87 Protein_2267 hypothetical protein -
  KU512_RS14570 - 2288269..2288448 (+) 180 Protein_2268 restriction endonuclease subunit S -
  KU512_RS14575 - 2288710..2288845 (+) 136 Protein_2269 restriction endonuclease subunit S -
  KU512_RS14580 - 2289088..2289462 (+) 375 Protein_2270 restriction endonuclease subunit S -
  KU512_RS11670 (KU512_11665) - 2289568..2289791 (-) 224 Protein_2271 hypothetical protein -
  KU512_RS11675 (KU512_11670) - 2289805..2290314 (-) 510 WP_031903864.1 DUF1643 domain-containing protein -
  KU512_RS11680 (KU512_11675) - 2290329..2290640 (-) 312 WP_031903865.1 DUF960 family protein -
  KU512_RS11685 (KU512_11680) - 2290727..2291077 (-) 351 WP_031903866.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KU512_RS11690 (KU512_11685) ccrB 2291543..2293171 (-) 1629 WP_061657937.1 cassette chromosome recombinase CcrB Machinery gene
  KU512_RS11695 (KU512_11690) ccrA 2293192..2294541 (-) 1350 WP_061657934.1 cassette chromosome recombinase CcrA Machinery gene
  KU512_RS11700 (KU512_11695) cch1 2294729..2296498 (-) 1770 WP_000020211.1 cassette chromosome replicative helicase -
  KU512_RS11705 (KU512_11700) ssb 2296498..2296794 (-) 297 WP_000220590.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62589.53 Da        Isoelectric Point: 9.7287

>NTDB_id=585557 KU512_RS11690 WP_061657937.1 2291543..2293171(-) (ccrB) [Staphylococcus aureus strain 359]
MQQLKQKRVAIYVRVSTEIQSTEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVIERVNQDNQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=585557 KU512_RS11690 WP_061657937.1 2291543..2293171(-) (ccrB) [Staphylococcus aureus strain 359]
ATGCAACAACTCAAACAAAAACGTGTCGCTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTGTACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGAAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACCGGTATCGTTCATTGTCCCCAATGCGGAGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACAAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTA
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(9-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.978

100

0.86