Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   KU512_RS06500 Genome accession   NZ_CP077933
Coordinates   1289059..1289556 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 359     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1284059..1294556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU512_RS06475 (KU512_06455) gcvPB 1284221..1285693 (-) 1473 WP_050956458.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  KU512_RS06480 (KU512_06460) gcvPA 1285686..1287032 (-) 1347 WP_048665334.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KU512_RS06485 (KU512_06465) gcvT 1287052..1288143 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KU512_RS06490 (KU512_06470) - 1288302..1288826 (-) 525 WP_001015117.1 shikimate kinase -
  KU512_RS06495 (KU512_06475) - 1288816..1288962 (-) 147 WP_001789879.1 hypothetical protein -
  KU512_RS06500 (KU512_06480) comGF 1289059..1289556 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU512_RS06505 (KU512_06485) comGE 1289474..1289773 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU512_RS06510 (KU512_06490) comGD 1289760..1290206 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU512_RS06515 (KU512_06495) comGC 1290184..1290495 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU512_RS06520 (KU512_06500) comGB 1290509..1291579 (-) 1071 Protein_1278 competence type IV pilus assembly protein ComGB -
  KU512_RS06525 (KU512_06505) comGA 1291551..1292525 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  KU512_RS06530 (KU512_06510) - 1292577..1293200 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KU512_RS06535 (KU512_06515) - 1293197..1293526 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU512_RS06540 (KU512_06520) - 1293526..1294512 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=585538 KU512_RS06500 WP_001789864.1 1289059..1289556(-) (comGF) [Staphylococcus aureus strain 359]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=585538 KU512_RS06500 WP_001789864.1 1289059..1289556(-) (comGF) [Staphylococcus aureus strain 359]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964