Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU526_RS11890 Genome accession   NZ_CP077931
Coordinates   2444407..2444802 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2439407..2449802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU526_RS11865 (KU526_11825) - 2440633..2441037 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU526_RS11870 (KU526_11830) - 2441634..2441867 (+) 234 WP_000384523.1 DUF1146 family protein -
  KU526_RS11875 (KU526_11835) murA 2441978..2443243 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU526_RS11880 (KU526_11840) fabZ 2443277..2443717 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU526_RS11885 (KU526_11845) - 2443773..2444213 (-) 441 WP_000846751.1 YwpF-like family protein -
  KU526_RS11890 (KU526_11850) ssb 2444407..2444802 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU526_RS11895 (KU526_11855) sceD 2445191..2445886 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  KU526_RS11900 (KU526_11860) tenA 2446274..2446963 (+) 690 WP_000396063.1 thiaminase II -
  KU526_RS11905 (KU526_11865) thiD 2446956..2447786 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU526_RS11910 (KU526_11870) thiM 2447770..2448561 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  KU526_RS11915 (KU526_11875) thiE 2448563..2449204 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=585476 KU526_RS11890 WP_000932694.1 2444407..2444802(+) (ssb) [Staphylococcus aureus strain 195]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=585476 KU526_RS11890 WP_000932694.1 2444407..2444802(+) (ssb) [Staphylococcus aureus strain 195]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992