Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KU504_RS08570 Genome accession   NZ_CP077926
Coordinates   1728423..1728869 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 197     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1723423..1733869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU504_RS08535 (KU504_08505) - 1723917..1724120 (+) 204 WP_000087561.1 YqgQ family protein -
  KU504_RS08540 (KU504_08510) - 1724117..1725103 (+) 987 WP_000161307.1 ROK family glucokinase -
  KU504_RS08545 (KU504_08515) - 1725103..1725432 (+) 330 WP_001018870.1 MTH1187 family thiamine-binding protein -
  KU504_RS08550 (KU504_08520) - 1725429..1726052 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  KU504_RS08555 (KU504_08525) comGA 1726104..1727078 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  KU504_RS08560 (KU504_08530) comGB 1727050..1728120 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU504_RS08565 (KU504_08535) comGC 1728134..1728445 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  KU504_RS08570 (KU504_08540) comGD 1728423..1728869 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU504_RS08575 (KU504_08545) comGE 1728856..1729155 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU504_RS08580 (KU504_08550) comGF 1729073..1729570 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU504_RS08585 (KU504_08555) - 1729667..1729813 (+) 147 WP_001789879.1 hypothetical protein -
  KU504_RS08590 (KU504_08560) - 1729803..1730327 (+) 525 WP_001015120.1 shikimate kinase -
  KU504_RS08595 (KU504_08565) gcvT 1730486..1731577 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  KU504_RS08600 (KU504_08570) gcvPA 1731597..1732943 (+) 1347 WP_031928187.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=585382 KU504_RS08570 WP_001796473.1 1728423..1728869(+) (comGD) [Staphylococcus aureus strain 197]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=585382 KU504_RS08570 WP_001796473.1 1728423..1728869(+) (comGD) [Staphylococcus aureus strain 197]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993