Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   KU504_RS08560 Genome accession   NZ_CP077926
Coordinates   1727050..1728120 (+) Length   356 a.a.
NCBI ID   WP_000776409.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 197     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722050..1733120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU504_RS08530 (KU504_08500) - 1722473..1723936 (+) 1464 WP_001017870.1 rhomboid family protein -
  KU504_RS08535 (KU504_08505) - 1723917..1724120 (+) 204 WP_000087561.1 YqgQ family protein -
  KU504_RS08540 (KU504_08510) - 1724117..1725103 (+) 987 WP_000161307.1 ROK family glucokinase -
  KU504_RS08545 (KU504_08515) - 1725103..1725432 (+) 330 WP_001018870.1 MTH1187 family thiamine-binding protein -
  KU504_RS08550 (KU504_08520) - 1725429..1726052 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  KU504_RS08555 (KU504_08525) comGA 1726104..1727078 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  KU504_RS08560 (KU504_08530) comGB 1727050..1728120 (+) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU504_RS08565 (KU504_08535) comGC 1728134..1728445 (+) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  KU504_RS08570 (KU504_08540) comGD 1728423..1728869 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU504_RS08575 (KU504_08545) comGE 1728856..1729155 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU504_RS08580 (KU504_08550) comGF 1729073..1729570 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU504_RS08585 (KU504_08555) - 1729667..1729813 (+) 147 WP_001789879.1 hypothetical protein -
  KU504_RS08590 (KU504_08560) - 1729803..1730327 (+) 525 WP_001015120.1 shikimate kinase -
  KU504_RS08595 (KU504_08565) gcvT 1730486..1731577 (+) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  KU504_RS08600 (KU504_08570) gcvPA 1731597..1732943 (+) 1347 WP_031928187.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41536.00 Da        Isoelectric Point: 10.1113

>NTDB_id=585380 KU504_RS08560 WP_000776409.1 1727050..1728120(+) (comGB) [Staphylococcus aureus strain 197]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGITILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNFTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=585380 KU504_RS08560 WP_000776409.1 1727050..1728120(+) (comGB) [Staphylococcus aureus strain 197]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCATCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATAATATTAAACTTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGCTATATTCGCAAATATTAGTGAGGCAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.876

100

0.989
  comGB Staphylococcus aureus N315

98.876

100

0.989