Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU504_RS05830 Genome accession   NZ_CP077926
Coordinates   1211251..1211646 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1206251..1216646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU504_RS05805 (KU504_05780) - 1207477..1207881 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU504_RS05810 (KU504_05785) - 1208478..1208711 (+) 234 WP_000384523.1 DUF1146 family protein -
  KU504_RS05815 (KU504_05790) murA 1208822..1210087 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU504_RS05820 (KU504_05795) fabZ 1210121..1210561 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU504_RS05825 (KU504_05800) - 1210617..1211057 (-) 441 WP_000846751.1 YwpF-like family protein -
  KU504_RS05830 (KU504_05805) ssb 1211251..1211646 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU504_RS05835 (KU504_05810) sceD 1212035..1212730 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  KU504_RS05840 (KU504_05815) tenA 1213118..1213807 (+) 690 WP_000396063.1 thiaminase II -
  KU504_RS05845 (KU504_05820) thiD 1213800..1214630 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU504_RS05850 (KU504_05825) thiM 1214614..1215405 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  KU504_RS05855 (KU504_05830) thiE 1215407..1216048 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=585365 KU504_RS05830 WP_000932694.1 1211251..1211646(+) (ssb) [Staphylococcus aureus strain 197]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=585365 KU504_RS05830 WP_000932694.1 1211251..1211646(+) (ssb) [Staphylococcus aureus strain 197]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992