Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MYG04_RS08560 Genome accession   NZ_CP095856
Coordinates   1763726..1764463 (+) Length   245 a.a.
NCBI ID   WP_108430031.1    Uniprot ID   -
Organism   Escherichia coli strain EC6563     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758726..1769463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS08545 (MYG04_08545) clpC 1759180..1761753 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MYG04_RS08550 (MYG04_08550) yfiH 1761883..1762614 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  MYG04_RS08555 (MYG04_08555) rluD 1762611..1763591 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MYG04_RS08560 (MYG04_08560) comL 1763726..1764463 (+) 738 WP_108430031.1 outer membrane protein assembly factor BamD Machinery gene
  MYG04_RS08565 (MYG04_08565) raiA 1764734..1765075 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MYG04_RS08570 (MYG04_08570) pheL 1765179..1765226 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MYG04_RS08575 (MYG04_08575) pheA 1765324..1766484 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  MYG04_RS08580 (MYG04_08580) tyrA 1766527..1767648 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MYG04_RS08585 (MYG04_08585) aroF 1767659..1768729 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MYG04_RS08590 (MYG04_08590) yfiL 1768939..1769304 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27819.36 Da        Isoelectric Point: 6.4874

>NTDB_id=585283 MYG04_RS08560 WP_108430031.1 1763726..1764463(+) (comL) [Escherichia coli strain EC6563]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALSLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=585283 MYG04_RS08560 WP_108430031.1 1763726..1764463(+) (comL) [Escherichia coli strain EC6563]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGTCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376