Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KU534_RS05340 Genome accession   NZ_CP077923
Coordinates   1007563..1008249 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 201     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002563..1013249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU534_RS05305 (KU534_05275) yqeH 1003090..1004190 (+) 1101 WP_225805689.1 ribosome biogenesis GTPase YqeH -
  KU534_RS05310 (KU534_05280) aroE 1004204..1005010 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  KU534_RS05315 (KU534_05285) yhbY 1005014..1005304 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  KU534_RS05320 (KU534_05290) nadD 1005307..1005876 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KU534_RS05325 (KU534_05295) yqeK 1005866..1006450 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KU534_RS05330 (KU534_05300) rsfS 1006451..1006804 (+) 354 WP_001088018.1 ribosome silencing factor -
  KU534_RS05335 (KU534_05305) - 1006807..1007523 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  KU534_RS05340 (KU534_05310) comEA 1007563..1008249 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  KU534_RS05345 (KU534_05315) - 1008341..1008802 (+) 462 WP_000439690.1 ComE operon protein 2 -
  KU534_RS05350 (KU534_05320) comEC 1008807..1011008 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU534_RS05355 (KU534_05325) holA 1011065..1012039 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  KU534_RS05360 (KU534_05330) rpsT 1012084..1012335 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=585244 KU534_RS05340 WP_001825349.1 1007563..1008249(+) (comEA) [Staphylococcus aureus strain 201]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=585244 KU534_RS05340 WP_001825349.1 1007563..1008249(+) (comEA) [Staphylococcus aureus strain 201]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961