Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU534_RS02660 Genome accession   NZ_CP077923
Coordinates   516209..516604 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 511209..521604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU534_RS02635 (KU534_02605) - 512378..512782 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU534_RS02640 (KU534_02610) - 513435..513668 (+) 234 WP_000384523.1 DUF1146 family protein -
  KU534_RS02645 (KU534_02615) murA 513779..515044 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU534_RS02650 (KU534_02620) fabZ 515078..515518 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU534_RS02655 (KU534_02625) - 515575..516015 (-) 441 WP_000846746.1 YwpF-like family protein -
  KU534_RS02660 (KU534_02630) ssb 516209..516604 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU534_RS02665 (KU534_02635) sceD 516993..517688 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  KU534_RS02670 (KU534_02640) tenA 518075..518764 (+) 690 WP_000396068.1 thiaminase II -
  KU534_RS02675 (KU534_02645) thiD 518757..519587 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU534_RS02680 (KU534_02650) thiM 519571..520362 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  KU534_RS02685 (KU534_02655) thiE 520364..521005 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=585232 KU534_RS02660 WP_000932694.1 516209..516604(+) (ssb) [Staphylococcus aureus strain 201]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=585232 KU534_RS02660 WP_000932694.1 516209..516604(+) (ssb) [Staphylococcus aureus strain 201]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992