Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MYL27_RS18120 Genome accession   NZ_CP095836
Coordinates   3677345..3678082 (+) Length   245 a.a.
NCBI ID   WP_212408128.1    Uniprot ID   -
Organism   Escherichia coli strain EC31     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672345..3683082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL27_RS18105 (MYL27_18020) clpC 3672799..3675372 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  MYL27_RS18110 (MYL27_18025) yfiH 3675502..3676233 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  MYL27_RS18115 (MYL27_18030) rluD 3676230..3677210 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MYL27_RS18120 (MYL27_18035) comL 3677345..3678082 (+) 738 WP_212408128.1 outer membrane protein assembly factor BamD Machinery gene
  MYL27_RS18125 (MYL27_18040) insG 3678186..3679533 (+) 1348 Protein_3531 IS4-like element IS4 family transposase -
  MYL27_RS18130 (MYL27_18045) raiA 3679794..3680135 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MYL27_RS18135 (MYL27_18050) pheL 3680239..3680286 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MYL27_RS18140 (MYL27_18055) pheA 3680385..3681545 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  MYL27_RS18145 (MYL27_18060) tyrA 3681588..3682709 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27869.40 Da        Isoelectric Point: 5.8500

>NTDB_id=585233 MYL27_RS18120 WP_212408128.1 3677345..3678082(+) (comL) [Escherichia coli strain EC31]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEDMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=585233 MYL27_RS18120 WP_212408128.1 3677345..3678082(+) (comL) [Escherichia coli strain EC31]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGACATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384