Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   KU525_RS01225 Genome accession   NZ_CP077920
Coordinates   245005..245991 (-) Length   328 a.a.
NCBI ID   WP_000959285.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240005..250991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU525_RS01200 (KU525_01195) - 240265..240612 (-) 348 WP_001242102.1 hypothetical protein -
  KU525_RS01205 (KU525_01200) - 240798..241391 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  KU525_RS01210 (KU525_01205) - 241495..241860 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  KU525_RS01215 (KU525_01210) yjbH 241883..242689 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  KU525_RS01220 (KU525_01215) pepF 243149..244957 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  KU525_RS01225 (KU525_01220) coiA 245005..245991 (-) 987 WP_000959285.1 competence protein CoiA Machinery gene
  KU525_RS01230 (KU525_01225) mecA 246112..246831 (-) 720 WP_001217728.1 adaptor protein MecA -
  KU525_RS01235 (KU525_01230) spxA 247202..247597 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  KU525_RS01240 (KU525_01235) trpS 247892..248881 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  KU525_RS01245 (KU525_01240) opp4C 248923..249804 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  KU525_RS01250 (KU525_01245) opp4B 249816..250778 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38811.37 Da        Isoelectric Point: 9.5840

>NTDB_id=585104 KU525_RS01225 WP_000959285.1 245005..245991(-) (coiA) [Staphylococcus aureus strain 277]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=585104 KU525_RS01225 WP_000959285.1 245005..245991(-) (coiA) [Staphylococcus aureus strain 277]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

98.171

100

0.982