Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU514_RS12425 Genome accession   NZ_CP077919
Coordinates   2493570..2493965 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 278     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2488570..2498965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU514_RS12395 (KU514_12320) - 2489829..2490233 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  KU514_RS12400 (KU514_12325) - 2490570..2490662 (+) 93 WP_031835036.1 hypothetical protein -
  KU514_RS12405 (KU514_12330) - 2490794..2491027 (+) 234 WP_049307434.1 DUF1146 family protein -
  KU514_RS12410 (KU514_12335) murA 2491138..2492403 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU514_RS12415 (KU514_12340) fabZ 2492437..2492877 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU514_RS12420 (KU514_12345) - 2492936..2493376 (-) 441 WP_000846746.1 YwpF-like family protein -
  KU514_RS12425 (KU514_12350) ssb 2493570..2493965 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU514_RS12430 (KU514_12355) sceD 2494354..2495049 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  KU514_RS12435 (KU514_12360) tenA 2495629..2496318 (+) 690 WP_000396079.1 thiaminase II -
  KU514_RS12440 (KU514_12365) thiD 2496311..2497141 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU514_RS12445 (KU514_12370) thiM 2497125..2497916 (+) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  KU514_RS12450 (KU514_12375) thiE 2497918..2498559 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=585098 KU514_RS12425 WP_000932694.1 2493570..2493965(+) (ssb) [Staphylococcus aureus strain 278]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=585098 KU514_RS12425 WP_000932694.1 2493570..2493965(+) (ssb) [Staphylococcus aureus strain 278]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992