Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KU502_RS13040 Genome accession   NZ_CP077916
Coordinates   2662572..2663258 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 281     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2657572..2668258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU502_RS13020 (KU502_13065) rpsT 2658486..2658737 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  KU502_RS13025 (KU502_13070) holA 2658782..2659756 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  KU502_RS13030 (KU502_13075) comEC 2659813..2662014 (-) 2202 WP_049307743.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU502_RS13035 (KU502_13080) - 2662019..2662480 (-) 462 WP_000439693.1 ComE operon protein 2 -
  KU502_RS13040 (KU502_13085) comEA 2662572..2663258 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  KU502_RS13045 (KU502_13090) - 2663298..2664014 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  KU502_RS13050 (KU502_13095) rsfS 2664017..2664370 (-) 354 WP_001088020.1 ribosome silencing factor -
  KU502_RS13055 (KU502_13100) yqeK 2664371..2664955 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KU502_RS13060 (KU502_13105) nadD 2664945..2665514 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KU502_RS13065 (KU502_13110) yhbY 2665517..2665807 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  KU502_RS13070 (KU502_13115) aroE 2665811..2666617 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  KU502_RS13075 (KU502_13120) yqeH 2666631..2667731 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=585014 KU502_RS13040 WP_001788928.1 2662572..2663258(-) (comEA) [Staphylococcus aureus strain 281]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=585014 KU502_RS13040 WP_001788928.1 2662572..2663258(-) (comEA) [Staphylococcus aureus strain 281]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969