Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KU527_RS13660 | Genome accession | NZ_CP077908 |
| Coordinates | 2757682..2758119 (+) | Length | 145 a.a. |
| NCBI ID | WP_225806344.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 322 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2747669..2764170 | 2757682..2758119 | within | 0 |
Gene organization within MGE regions
Location: 2747669..2764170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU527_RS13570 (KU527_13535) | sufB | 2747669..2749066 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| KU527_RS13575 (KU527_13540) | - | 2749134..2750183 (-) | 1050 | WP_001145726.1 | tyrosine-type recombinase/integrase | - |
| KU527_RS13580 (KU527_13545) | - | 2750296..2750475 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| KU527_RS13585 (KU527_13550) | - | 2750455..2751387 (-) | 933 | WP_000392186.1 | hypothetical protein | - |
| KU527_RS13590 (KU527_13555) | - | 2751419..2752144 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| KU527_RS13595 (KU527_13560) | - | 2752172..2752846 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| KU527_RS13600 (KU527_13565) | - | 2752863..2753195 (-) | 333 | WP_001055143.1 | helix-turn-helix domain-containing protein | - |
| KU527_RS13605 (KU527_13570) | - | 2753458..2753652 (+) | 195 | WP_000108122.1 | helix-turn-helix domain-containing protein | - |
| KU527_RS13610 (KU527_13575) | - | 2753652..2754416 (+) | 765 | WP_001002759.1 | phage antirepressor Ant | - |
| KU527_RS13615 (KU527_13580) | - | 2754433..2754627 (+) | 195 | WP_001148854.1 | hypothetical protein | - |
| KU527_RS13620 (KU527_13585) | - | 2754658..2754801 (+) | 144 | WP_000939503.1 | hypothetical protein | - |
| KU527_RS13625 (KU527_13590) | - | 2754822..2755379 (-) | 558 | WP_000388992.1 | hypothetical protein | - |
| KU527_RS13630 (KU527_13595) | - | 2755450..2755671 (+) | 222 | WP_000977381.1 | hypothetical protein | - |
| KU527_RS13635 (KU527_13600) | - | 2755664..2755825 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| KU527_RS13640 (KU527_13605) | - | 2755918..2756220 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| KU527_RS13645 (KU527_13610) | - | 2756225..2756485 (+) | 261 | WP_000291067.1 | DUF1108 family protein | - |
| KU527_RS13650 (KU527_13615) | - | 2756498..2757034 (+) | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| KU527_RS13655 (KU527_13620) | - | 2757035..2757685 (+) | 651 | WP_000840496.1 | ERF family protein | - |
| KU527_RS13660 (KU527_13625) | ssbA | 2757682..2758119 (+) | 438 | WP_225806344.1 | single-stranded DNA-binding protein | Machinery gene |
| KU527_RS13665 (KU527_13630) | - | 2758131..2758805 (+) | 675 | WP_000057261.1 | putative HNHc nuclease | - |
| KU527_RS13670 (KU527_13635) | - | 2758802..2758951 (+) | 150 | WP_001622139.1 | hypothetical protein | - |
| KU527_RS13675 (KU527_13640) | - | 2758944..2759225 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| KU527_RS13680 (KU527_13645) | - | 2759291..2760061 (+) | 771 | WP_000190253.1 | conserved phage C-terminal domain-containing protein | - |
| KU527_RS13685 (KU527_13650) | - | 2760071..2760850 (+) | 780 | WP_000803062.1 | ATP-binding protein | - |
| KU527_RS13690 (KU527_13655) | - | 2760844..2761002 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| KU527_RS13695 (KU527_13660) | - | 2761015..2761236 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| KU527_RS13700 (KU527_13665) | - | 2761246..2761650 (+) | 405 | WP_000049795.1 | DUF1064 domain-containing protein | - |
| KU527_RS13705 (KU527_13670) | - | 2761655..2761843 (+) | 189 | WP_020808085.1 | DUF3113 family protein | - |
| KU527_RS13710 (KU527_13675) | - | 2761844..2762203 (+) | 360 | WP_001622141.1 | SA1788 family PVL leukocidin-associated protein | - |
| KU527_RS13715 (KU527_13680) | - | 2762204..2762452 (+) | 249 | WP_001622142.1 | phi PVL orf 51-like protein | - |
| KU527_RS13720 (KU527_13685) | - | 2762467..2762721 (+) | 255 | WP_001661914.1 | DUF1024 family protein | - |
| KU527_RS13725 (KU527_13690) | - | 2762708..2762878 (+) | 171 | WP_000714412.1 | hypothetical protein | - |
| KU527_RS13730 (KU527_13695) | - | 2762871..2763404 (+) | 534 | WP_015984502.1 | dUTP diphosphatase | - |
| KU527_RS13735 (KU527_13700) | - | 2763459..2763614 (+) | 156 | WP_078368224.1 | hypothetical protein | - |
| KU527_RS13740 (KU527_13705) | - | 2763631..2763819 (+) | 189 | WP_225806343.1 | DUF1381 domain-containing protein | - |
| KU527_RS13745 (KU527_13710) | - | 2763794..2763994 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| KU527_RS13750 (KU527_13715) | rinB | 2763997..2764170 (+) | 174 | WP_025174872.1 | transcriptional activator RinB | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 16180.76 Da Isoelectric Point: 5.8347
>NTDB_id=584888 KU527_RS13660 WP_225806344.1 2757682..2758119(+) (ssbA) [Staphylococcus aureus strain 322]
MNTVNLIGNLVADPELKGQNNNLVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNTPQNRQQSNNPFANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNLVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNTPQNRQQSNNPFANGPIEISDDDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=584888 KU527_RS13660 WP_225806344.1 2757682..2758119(+) (ssbA) [Staphylococcus aureus strain 322]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACTTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACACACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
GTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACTTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACACACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
GTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
38.889 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.448 |