Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KU505_RS11260 Genome accession   NZ_CP077899
Coordinates   2277641..2278036 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 324     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2272641..2283036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU505_RS11235 (KU505_11160) thiE 2273238..2273879 (-) 642 WP_225805902.1 thiamine phosphate synthase -
  KU505_RS11240 (KU505_11165) thiM 2273881..2274672 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  KU505_RS11245 (KU505_11170) thiD 2274656..2275486 (-) 831 WP_000594946.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KU505_RS11250 (KU505_11175) tenA 2275479..2276168 (-) 690 WP_000396067.1 thiaminase II -
  KU505_RS11255 (KU505_11180) sceD 2276556..2277251 (-) 696 WP_000752012.1 lytic transglycosylase SceD -
  KU505_RS11260 (KU505_11185) ssb 2277641..2278036 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  KU505_RS11265 (KU505_11190) - 2278230..2278670 (+) 441 WP_000846751.1 YwpF-like family protein -
  KU505_RS11270 (KU505_11195) fabZ 2278726..2279166 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KU505_RS11275 (KU505_11200) murA 2279200..2280465 (-) 1266 WP_000358004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KU505_RS11280 (KU505_11205) - 2280576..2280809 (-) 234 WP_000384523.1 DUF1146 family protein -
  KU505_RS11285 (KU505_11210) - 2280941..2281034 (-) 94 Protein_2188 hypothetical protein -
  KU505_RS11290 (KU505_11215) - 2281629..2282033 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=584843 KU505_RS11260 WP_000932694.1 2277641..2278036(-) (ssb) [Staphylococcus aureus strain 324]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=584843 KU505_RS11260 WP_000932694.1 2277641..2278036(-) (ssb) [Staphylococcus aureus strain 324]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992