Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KU505_RS06600 Genome accession   NZ_CP077899
Coordinates   1363482..1364354 (+) Length   290 a.a.
NCBI ID   WP_225806042.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 324     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1358482..1369354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU505_RS06580 (KU505_06535) sucC 1358597..1359763 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  KU505_RS06585 (KU505_06540) sucD 1359785..1360693 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  KU505_RS06590 (KU505_06545) - 1360920..1362038 (+) 1119 WP_001041649.1 LysM peptidoglycan-binding domain-containing protein -
  KU505_RS06595 (KU505_06550) fmhC 1362066..1363310 (+) 1245 WP_225806041.1 FemA/FemB family glycyltransferase FmhC -
  KU505_RS06600 (KU505_06555) dprA 1363482..1364354 (+) 873 WP_225806042.1 DNA-processing protein DprA Machinery gene
  KU505_RS06605 (KU505_06560) topA 1364528..1366603 (+) 2076 WP_001622395.1 type I DNA topoisomerase -
  KU505_RS06610 (KU505_06565) trmFO 1366759..1368066 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33562.04 Da        Isoelectric Point: 9.6905

>NTDB_id=584820 KU505_RS06600 WP_225806042.1 1363482..1364354(+) (dprA) [Staphylococcus aureus strain 324]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLNHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLVQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=584820 KU505_RS06600 WP_225806042.1 1363482..1364354(+) (dprA) [Staphylococcus aureus strain 324]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTAATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGAAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGTTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACGCATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979