Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I872_RS09015 Genome accession   NC_021175
Coordinates   1825008..1825502 (-) Length   164 a.a.
NCBI ID   WP_015605787.1    Uniprot ID   A0A512ACE8
Organism   Streptococcus cristatus AS 1.3089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1820008..1830502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS08995 (I872_09010) - 1822454..1823434 (+) 981 WP_015605784.1 magnesium transporter CorA family protein -
  I872_RS09000 (I872_09015) - 1823416..1824090 (+) 675 WP_015605785.1 DUF1129 domain-containing protein -
  I872_RS09005 (I872_09020) - 1824121..1824630 (-) 510 WP_015605786.1 GNAT family N-acetyltransferase -
  I872_RS09010 (I872_09025) rpsR 1824728..1824967 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  I872_RS09015 (I872_09030) ssbA 1825008..1825502 (-) 495 WP_015605787.1 single-stranded DNA-binding protein Machinery gene
  I872_RS09020 (I872_09035) rpsF 1825514..1825804 (-) 291 WP_015605788.1 30S ribosomal protein S6 -
  I872_RS09025 (I872_09040) fni 1825981..1826985 (-) 1005 WP_015605789.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  I872_RS09030 (I872_09045) - 1826969..1827988 (-) 1020 WP_015605790.1 phosphomevalonate kinase -
  I872_RS09035 (I872_09050) mvaD 1827978..1828925 (-) 948 WP_015605791.1 diphosphomevalonate decarboxylase -
  I872_RS09040 (I872_09055) mvk 1828907..1829785 (-) 879 WP_015605792.1 mevalonate kinase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18029.77 Da        Isoelectric Point: 4.7079

>NTDB_id=58478 I872_RS09015 WP_015605787.1 1825008..1825502(-) (ssbA) [Streptococcus cristatus AS 1.3089]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYDNQQGQRVYVTEVVADNFQLLESRASREGQASAGFGGGGFGGNSAPSYGSADSFNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=58478 I872_RS09015 WP_015605787.1 1825008..1825502(-) (ssbA) [Streptococcus cristatus AS 1.3089]
ATGATTAATAACGTTGTACTTGTGGGACGTATGACCCGTGATGCTGAACTTCGCTATACACCGCAGAACCAAGCGGTCGC
AACCTTTACTCTAGCTGTTAATCGCAACTTTAAAAATCAAAGTGGTGAGCGTGAAGCGGACTTTATCAATGTTGTTATCT
GGCGTCAGCAGGCAGAAAATCTTGCTAATTGGGCCAAAAAAGGCGCTCTAATCGGAATTACTGGTCGCATTCAGACTCGT
AACTACGACAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTCGTTGCAGACAACTTCCAGCTTCTGGAAAGTCGTGC
AAGCCGTGAAGGGCAGGCTTCAGCTGGCTTTGGTGGCGGTGGCTTCGGTGGAAATTCTGCACCAAGCTATGGAAGTGCTG
ACTCATTCAACCAAGTACCGAATTTTTCTCGTGATGAAAGCCCATTTGGCAATTCAAATCCAATGGACATTTCAGACGAT
GATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512ACE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.579

Multiple sequence alignment